RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ARHGAP1Q07960 439 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 FOXD4L5Q5VV16 416 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-211ENST00000618700 ANO1Q5XXA6 986 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 TLK2Q86UE8 772 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 ZNF579Q8NAF0 562 aaKnown RBP22.34■■□□□ 1.17
UPF3A-211ENST00000618700 FOXD4L4Q8WXT5 416 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-211ENST00000618700 COPS5Q92905 334 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 EMID1Q96A84 441 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-211ENST00000618700 UPF3AQ9H1J1 476 aaKnown RBP22.34■■□□□ 1.17
UPF3A-211ENST00000618700 PCDHB6Q9Y5E3 794 aa22.34■■□□□ 1.17
UPF3A-211ENST00000618700 NFASCO94856 1347 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 SYNRGQ9UMZ2 1314 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 MYH15Q9Y2K3 1946 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 IPO5O00410 1097 aaKnown RBP22.33■■□□□ 1.17
UPF3A-211ENST00000618700 NEMFO60524 1076 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 GGPS1O95749 300 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 GH1P01241 217 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 GJB1P08034 283 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 MCM7P33993 719 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 NKX3-2P78367 333 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 NEDD9Q14511 834 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 CELF3Q5SZQ8 465 aaKnown RBP22.33■■□□□ 1.17
UPF3A-211ENST00000618700 FAM173BQ6P4H8 233 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 SLC5A5Q92911 643 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 FAM212AQ96EL1 285 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 ZNF577Q9BSK1 485 aa22.33■■□□□ 1.17
UPF3A-211ENST00000618700 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.33■■□□□ 1.17
UPF3A-211ENST00000618700 CIZ1Q9ULV3 898 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-211ENST00000618700 TBX3O15119 743 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 DHX15O43143 795 aaKnown RBP22.32■■□□□ 1.16
UPF3A-211ENST00000618700 ADAMTS4O75173 837 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 FARP2O94887 1054 aaPredicted RBP22.32■■□□□ 1.16
UPF3A-211ENST00000618700 GJA9P57773 515 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 ZNF174Q15697 407 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 METTL7BQ6UX53 244 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 GIMAP8Q8ND71 665 aaPredicted RBP22.32■■□□□ 1.16
UPF3A-211ENST00000618700 HAS1Q92839 578 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 DEFB118Q96PH6 123 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 BCAS3Q9H6U6 928 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 XPNPEP3Q9NQH7 507 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 PKD2L1Q9P0L9 805 aa22.32■■□□□ 1.16
UPF3A-211ENST00000618700 CTAGE5O15320 804 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 NUCB2P80303 420 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 DHX37Q8IY37 1157 aaKnown RBP22.31■■□□□ 1.16
UPF3A-211ENST00000618700 OR6J1Q8NGC5 347 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 MTMR9Q96QG7 549 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 RIT2Q99578 217 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 CRISPLD2Q9H0B8 497 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 TMEM60Q9H2L4 133 aa22.31■■□□□ 1.16
UPF3A-211ENST00000618700 DOCK5Q9H7D0 1870 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 DYNC1LI2O43237 492 aaPredicted RBP22.3■■□□□ 1.16
UPF3A-211ENST00000618700 SOX10P56693 466 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 LAMC2Q13753 1193 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 CALCRLQ16602 461 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 CYFIP1Q7L576 1253 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 C4orf32Q8N8J7 132 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 FAM20AQ96MK3 541 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 PHF12Q96QT6 1004 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 SDF4Q9BRK5 362 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 TBC1D22BQ9NU19 505 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 OGDHLQ9ULD0 1010 aa22.3■■□□□ 1.16
UPF3A-211ENST00000618700 SORBS3O60504 671 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 PSMD10O75832 226 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 PGK1P00558 417 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 CST5P28325 142 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-211ENST00000618700 GJA8P48165 433 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 IRX5P78411 483 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-211ENST00000618700 PPTC7Q8NI37 304 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 U2AF1L4Q8WU68 220 aaKnown RBP22.29■■□□□ 1.16
UPF3A-211ENST00000618700 GJA10Q969M2 543 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 UIMC1Q96RL1 719 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 AP5M1Q9H0R1 490 aa22.29■■□□□ 1.16
UPF3A-211ENST00000618700 JPH1Q9HDC5 661 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-211ENST00000618700 MYADML2A6NDP7 307 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 A6NJR5 290 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 SGPL1O95470 568 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 HSDL1Q3SXM5 330 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 LRCH2Q5VUJ6 765 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 B3GNT9Q6UX72 402 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 SLFN12Q8IYM2 578 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 KLHDC9Q8NEP7 349 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 SPATA33Q96N06 139 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 FTOQ9C0B1 505 aaKnown RBP eCLIP22.28■■□□□ 1.16
UPF3A-211ENST00000618700 MLXIPQ9HAP2 919 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 SPC25Q9HBM1 224 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 SLC9A2Q9UBY0 812 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 TELO2Q9Y4R8 837 aa22.28■■□□□ 1.16
UPF3A-211ENST00000618700 KIAA0100Q14667 2235 aaKnown RBP22.27■■□□□ 1.16
UPF3A-211ENST00000618700 CCNE2O96020 404 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 MMP3P08254 477 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 OR52Z1P0C646 297 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 HOXD8P13378 290 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-211ENST00000618700 ATP2C1P98194 919 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-211ENST00000618700 PTGDRQ13258 359 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 AFG1LQ8WV93 481 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 USP28Q96RU2 1077 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 GPR20Q99678 358 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 TEKT3Q9BXF9 490 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 VAV3Q9UKW4 847 aa22.27■■□□□ 1.16
UPF3A-211ENST00000618700 LAD1O00515 517 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms