RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SMIM10L2BP0DMW5 78 aa20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 MCM5P33992 734 aa20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 TRIM71Q2Q1W2 868 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 TELO2Q9Y4R8 837 aa20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 PTPRSQ13332 1948 aa20.27■□□□□ 0.84
SHKBP1-223ENST00000600552 ABHD14A-ACY1A0A1B0GW23 586 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 RSPH10B2B2RC85 870 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 SPATA31C2B4DYI2 1134 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 SLC27A2O14975 620 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 TREHO43280 583 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 CXCL10P02778 98 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 RSPH10BP0C881 870 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 HOXD8P13378 290 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 GRB10Q13322 594 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 COL9A3Q14050 684 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 NEDD9Q14511 834 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 MBTPS1Q14703 1052 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 TRIM50Q86XT4 487 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 SRBD1Q8N5C6 995 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 SPZ1Q9BXG8 430 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 LSG1Q9H089 658 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 ANO2Q9NQ90 1003 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 SETD4Q9NVD3 440 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 PKD2L1Q9P0L9 805 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 VCANP13611 3396 aa20.26■□□□□ 0.83
SHKBP1-223ENST00000600552 SH2B2O14492 632 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 FIBPO43427 364 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 LGR5O75473 907 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 GNAQP50148 359 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 RBL2Q08999 1139 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 SEMA3FQ13275 785 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 TRAF7Q6Q0C0 670 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 SKAP1Q86WV1 359 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 GDPD5Q8WTR4 605 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 NECAB3Q96P71 396 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 UHRF1Q96T88 793 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 LZTS2Q9BRK4 669 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 RNPEPQ9H4A4 650 aa20.25■□□□□ 0.83
SHKBP1-223ENST00000600552 UBE2SQ16763 222 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 CREB3L3Q68CJ9 461 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 METTL7BQ6UX53 244 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 NLRX1Q86UT6 975 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 SERINC5Q86VE9 423 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 MYOCDQ8IZQ8 938 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 TMTC2Q8N394 836 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 DBF4BQ8NFT6 615 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 INPP4AQ96PE3 977 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 RAD9AQ99638 391 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 GPR20Q99678 358 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 ESYT1Q9BSJ8 1104 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 USP26Q9BXU7 913 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 PSTPIP2Q9H939 334 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 SLC12A7Q9Y666 1083 aa20.24■□□□□ 0.83
SHKBP1-223ENST00000600552 MEIS2O14770 477 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 STAM2O75886 525 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 ICAM3P32942 547 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 KCNQ1P51787 676 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 ARHGAP4P98171 946 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 TMEM87BQ96K49 555 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 MAP3K14Q99558 947 aa20.23■□□□□ 0.83
SHKBP1-223ENST00000600552 EFCAB14O75071 495 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 UPP2O95045 317 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 GJB5O95377 273 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 AMHP03971 560 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 PCNX4Q63HM2 1172 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 HEATR3Q7Z4Q2 680 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 MICU3Q86XE3 530 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 ZNF215Q9UL58 517 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 KAT6AQ92794 2004 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 FRMPD4Q14CM0 1322 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 EMSYQ7Z589 1322 aa20.22■□□□□ 0.83
SHKBP1-223ENST00000600552 CALM1P0DP23 149 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 CALM2P0DP24 149 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 CALM3P0DP25 149 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 GNAT1P11488 350 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 AAK1Q2M2I8 961 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 SYNE3Q6ZMZ3 975 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 SEPT8Q92599 483 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 OSBPL7Q9BZF2 842 aa20.21■□□□□ 0.83
SHKBP1-223ENST00000600552 LINC01553A4QN01 128 aa20.2■□□□□ 0.82
SHKBP1-223ENST00000600552 MARK3P27448 753 aa20.2■□□□□ 0.82
SHKBP1-223ENST00000600552 SMARCA1P28370 1054 aa20.2■□□□□ 0.82
SHKBP1-223ENST00000600552 FANCBQ8NB91 859 aa20.2■□□□□ 0.82
SHKBP1-223ENST00000600552 TCEANC2Q96MN5 208 aa20.2■□□□□ 0.82
SHKBP1-223ENST00000600552 TGS1Q96RS0 853 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-223ENST00000600552 SPDYE3A6NKU9 549 aa20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 PIK3CDO00329 1044 aa20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 LPXNO60711 386 aa20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 ATP9AO75110 1047 aa20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 POU3F3P20264 500 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 TCF7P36402 384 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 XRRA1Q6P2D8 792 aa20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 SUGCTQ9HAC7 445 aa20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 NAP1L2Q9ULW6 460 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-223ENST00000600552 SPTBN5Q9NRC6 3674 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 BMP1P13497 986 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 LIFRP42702 1097 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 NECTIN1Q15223 517 aa20.18■□□□□ 0.82
SHKBP1-223ENST00000600552 PLEKHG4Q58EX7 1191 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms