RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 ZNF396Q96N95 335 aaPredicted RBP18.89■□□□□ 0.61
USHBP1-210ENST00000600286 NFASCO94856 1347 aa18.89■□□□□ 0.61
USHBP1-210ENST00000600286 KPNA6O60684 536 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 GAS7O60861 476 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 FOXD4L5Q5VV16 416 aaPredicted RBP18.88■□□□□ 0.61
USHBP1-210ENST00000600286 MYSM1Q5VVJ2 828 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 FOXD4L4Q8WXT5 416 aaPredicted RBP18.88■□□□□ 0.61
USHBP1-210ENST00000600286 EMID1Q96A84 441 aaPredicted RBP18.88■□□□□ 0.61
USHBP1-210ENST00000600286 IPO9Q96P70 1041 aaKnown RBP18.88■□□□□ 0.61
USHBP1-210ENST00000600286 RIT2Q99578 217 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 TEKT3Q9BXF9 490 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 JPH1Q9HDC5 661 aaPredicted RBP18.88■□□□□ 0.61
USHBP1-210ENST00000600286 LCTP09848 1927 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 ALPK3Q96L96 1907 aa18.88■□□□□ 0.61
USHBP1-210ENST00000600286 RANBP2P49792 3224 aaKnown RBP18.87■□□□□ 0.61
USHBP1-210ENST00000600286 LAD1O00515 517 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 MSH4O15457 936 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 F13A1P00488 732 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 PGK1P00558 417 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 KCNA2P16389 499 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 SP2Q02086 613 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 RESTQ13127 1097 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 SEMA3FQ13275 785 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 FSCN1Q16658 493 aaKnown RBP18.87■□□□□ 0.61
USHBP1-210ENST00000600286 LRCH2Q5VUJ6 765 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 ANKLE1Q8NAG6 615 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 COPS5Q92905 334 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 UPF3AQ9H1J1 476 aaKnown RBP18.87■□□□□ 0.61
USHBP1-210ENST00000600286 POLR3EQ9NVU0 708 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 SLC9A2Q9UBY0 812 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 OGDHLQ9ULD0 1010 aa18.87■□□□□ 0.61
USHBP1-210ENST00000600286 SYNRGQ9UMZ2 1314 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 ATP9AO75110 1047 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 KRT76Q01546 638 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 ARHGAP1Q07960 439 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 DGKDQ16760 1214 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 TMEM266Q2M3C6 531 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 GJC2Q5T442 439 aaPredicted RBP18.86■□□□□ 0.61
USHBP1-210ENST00000600286 PPTC7Q8NI37 304 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 SEPT1Q8WYJ6 367 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 SLC5A5Q92911 643 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 LENG9Q96B70 501 aa18.86■□□□□ 0.61
USHBP1-210ENST00000600286 LENG1Q96BZ8 264 aaPredicted RBP18.86■□□□□ 0.61
USHBP1-210ENST00000600286 TSEN34Q9BSV6 310 aaKnown RBP18.86■□□□□ 0.61
USHBP1-210ENST00000600286 CIZ1Q9ULV3 898 aaPredicted RBP18.86■□□□□ 0.61
USHBP1-210ENST00000600286 MCM3APO60318 1980 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 SLC37A4O43826 429 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 EDIL3O43854 480 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 SORBS3O60504 671 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 PPFIA4O75335 1185 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 FARP2O94887 1054 aaPredicted RBP18.85■□□□□ 0.61
USHBP1-210ENST00000600286 SP4Q02446 784 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 LRRC41Q15345 812 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 ATL3Q6DD88 541 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 POTEDQ86YR6 584 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 AFG1LQ8WV93 481 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 VTI1AQ96AJ9 217 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 RAB34Q9BZG1 259 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 CRISPLD2Q9H0B8 497 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 PCDHA12Q9UN75 941 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 SAMM50Q9Y512 469 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 PCDHB6Q9Y5E3 794 aa18.85■□□□□ 0.61
USHBP1-210ENST00000600286 CEP290O15078 2479 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 MOXD2PA6NHM9 499 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 A6NJR5 290 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 DDX39AO00148 427 aaKnown RBP18.84■□□□□ 0.61
USHBP1-210ENST00000600286 DNM1LO00429 736 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 ADCY6O43306 1168 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 CABYRO75952 493 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 BRD1O95696 1058 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 MYL3P08590 195 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 OR52Z1P0C646 297 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 CST5P28325 142 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-210ENST00000600286 TOB1P50616 345 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-210ENST00000600286 NKX3-2P78367 333 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 KCNA10Q16322 511 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 TMEM63BQ5T3F8 832 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 ZNF746Q6NUN9 644 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-210ENST00000600286 SMAP1Q8IYB5 467 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-210ENST00000600286 ETNPPLQ8TBG4 499 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 AZI2Q9H6S1 392 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 KCNMB3Q9NPA1 279 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.84■□□□□ 0.61
USHBP1-210ENST00000600286 CFAP45Q9UL16 551 aa18.84■□□□□ 0.61
USHBP1-210ENST00000600286 ADAMTS4O75173 837 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 SFNP31947 248 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 TXKP42681 527 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 JAK3P52333 1124 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 BEX3Q00994 111 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 PTGDRQ13258 359 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 ITGB3BPQ13352 177 aaPredicted RBP18.83■□□□□ 0.6
USHBP1-210ENST00000600286 MIS18BP1Q6P0N0 1132 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 KLHDC9Q8NEP7 349 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 UIMC1Q96RL1 719 aa18.83■□□□□ 0.6
USHBP1-210ENST00000600286 ELP1O95163 1332 aa18.82■□□□□ 0.6
USHBP1-210ENST00000600286 WDR64B1ANS9 1081 aa18.82■□□□□ 0.6
USHBP1-210ENST00000600286 PSMD10O75832 226 aa18.82■□□□□ 0.6
USHBP1-210ENST00000600286 PSAPP07602 524 aa18.82■□□□□ 0.6
USHBP1-210ENST00000600286 MMP3P08254 477 aa18.82■□□□□ 0.6
USHBP1-210ENST00000600286 ACTR2P61160 394 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms