RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 UIMC1Q96RL1 719 aa17.38■□□□□ 0.37
UPF1-206ENST00000598471 NUDT12Q9BQG2 462 aa17.38■□□□□ 0.37
UPF1-206ENST00000598471 SDF4Q9BRK5 362 aa17.38■□□□□ 0.37
UPF1-206ENST00000598471 CLSTN2Q9H4D0 955 aa17.38■□□□□ 0.37
UPF1-206ENST00000598471 TMEM63CQ9P1W3 806 aa17.38■□□□□ 0.37
UPF1-206ENST00000598471 HOOK1Q9UJC3 728 aaKnown RBP17.38■□□□□ 0.37
UPF1-206ENST00000598471 VAV3Q9UKW4 847 aa17.38■□□□□ 0.37
UPF1-206ENST00000598471 PP2D1A8MPX8 630 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 RRAGBQ5VZM2 374 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 KANK3Q6NY19 840 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 ARMCX2Q7L311 632 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 CEP57L1Q8IYX8 460 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 MSL3Q8N5Y2 521 aaKnown RBP17.37■□□□□ 0.37
UPF1-206ENST00000598471 CNNM3Q8NE01 707 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 TNMDQ9H2S6 317 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 DISC1Q9NRI5 854 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 PKD2L1Q9P0L9 805 aa17.37■□□□□ 0.37
UPF1-206ENST00000598471 SPATA31C2B4DYI2 1134 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 GPR25O00155 361 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 RGS20O76081 388 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 TGFB3P10600 412 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 CDC25AP30304 524 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 CCT6AP40227 531 aaKnown RBP17.36■□□□□ 0.37
UPF1-206ENST00000598471 STAT6P42226 847 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 LACTBP83111 547 aaPredicted RBP17.36■□□□□ 0.37
UPF1-206ENST00000598471 KRT76Q01546 638 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 SP3Q02447 781 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 SPIRE1Q08AE8 756 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 KARSQ15046 597 aaKnown RBP17.36■□□□□ 0.37
UPF1-206ENST00000598471 ZRSR1Q15695 479 aaKnown RBP17.36■□□□□ 0.37
UPF1-206ENST00000598471 MAMDC4Q6UXC1 1216 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 KRBA2Q6ZNG9 492 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 SEPT14Q6ZU15 432 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 OTOP1Q7RTM1 612 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 GIMAP8Q8ND71 665 aaPredicted RBP17.36■□□□□ 0.37
UPF1-206ENST00000598471 DHX58Q96C10 678 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 MAML3Q96JK9 1138 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 PANK2Q9BZ23 570 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 NT5C3AQ9H0P0 336 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 CUEDC2Q9H467 287 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 VTA1Q9NP79 307 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 NFASCO94856 1347 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 SYNGAP1Q96PV0 1343 aa17.36■□□□□ 0.37
UPF1-206ENST00000598471 CHMP2AO43633 222 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 HOXC6P09630 235 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 JAK3P52333 1124 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 SEMA3FQ13275 785 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 ITGB3BPQ13352 177 aaPredicted RBP17.35■□□□□ 0.37
UPF1-206ENST00000598471 NEK9Q8TD19 979 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 APBA2Q99767 749 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 SENP7Q9BQF6 1050 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 GZF1Q9H116 711 aaPredicted RBP17.35■□□□□ 0.37
UPF1-206ENST00000598471 UNC45AQ9H3U1 944 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 MAGEF1Q9HAY2 307 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 LRRC37A2A6NM11 1700 aa17.35■□□□□ 0.37
UPF1-206ENST00000598471 DDX39AO00148 427 aaKnown RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 ECM2O94769 699 aaPredicted RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 SLFN14P0C7P3 912 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 KCNA2P16389 499 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 SFNP31947 248 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 PSMC4P43686 418 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 NEDD9Q14511 834 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 EPHA7Q15375 998 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 LONRF3Q496Y0 759 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 ZNF746Q6NUN9 644 aaPredicted RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 EEPD1Q7L9B9 569 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 MIER3Q7Z3K6 550 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 ELOA2Q8IYF1 753 aaPredicted RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 KCTD17Q8N5Z5 321 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 RDM1Q8NG50 284 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 TINF2Q9BSI4 451 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 MMTAG2Q9BU76 263 aaKnown RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 PRDM10Q9NQV6 1147 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 ZNFX1Q9P2E3 1918 aaKnown RBP17.34■□□□□ 0.37
UPF1-206ENST00000598471 STK17AQ9UEE5 414 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 SERTAD1Q9UHV2 236 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 PLXNA1Q9UIW2 1896 aa17.34■□□□□ 0.37
UPF1-206ENST00000598471 A0A087X0B3 334 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 WDR64B1ANS9 1081 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 DHX15O43143 795 aaKnown RBP17.33■□□□□ 0.36
UPF1-206ENST00000598471 ATP9AO75110 1047 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 PLCG1P19174 1290 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 MUTP22033 750 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 RPA1P27694 616 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 TTLL4Q14679 1199 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 CAMK4Q16566 473 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 ZSCAN23Q3MJ62 389 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 HYIQ5T013 277 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 COL13A1Q5TAT6 717 aaPredicted RBP17.33■□□□□ 0.36
UPF1-206ENST00000598471 B3GNT9Q6UX72 402 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 FBXO16Q8IX29 292 aaPredicted RBP17.33■□□□□ 0.36
UPF1-206ENST00000598471 NPLOC4Q8TAT6 608 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 SCFD2Q8WU76 684 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 ZNF296Q8WUU4 475 aaPredicted RBP17.33■□□□□ 0.36
UPF1-206ENST00000598471 USP6NLQ92738 828 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 POLR3CQ9BUI4 534 aaPredicted RBP17.33■□□□□ 0.36
UPF1-206ENST00000598471 JPH1Q9HDC5 661 aaPredicted RBP17.33■□□□□ 0.36
UPF1-206ENST00000598471 TUFT1Q9NNX1 390 aa17.33■□□□□ 0.36
UPF1-206ENST00000598471 SAMM50Q9Y512 469 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms