RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 DDX4Q9NQI0 724 aaKnown RBP13.64□□□□□ -0.23
USHBP1-207ENST00000597928 DNAJC17Q9NVM6 304 aaKnown RBP13.64□□□□□ -0.23
USHBP1-207ENST00000597928 MTMR4Q9NYA4 1195 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 KCPQ6ZWJ8 1503 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 PPP1R12BO60237 982 aaPredicted RBP13.64□□□□□ -0.23
USHBP1-207ENST00000597928 TRIM49P0CI25 452 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 TRIM49CP0CI26 452 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 XRCC5P13010 732 aaKnown RBP13.64□□□□□ -0.23
USHBP1-207ENST00000597928 ZNF746Q6NUN9 644 aaPredicted RBP13.64□□□□□ -0.23
USHBP1-207ENST00000597928 ERMNQ8TAM6 284 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 RAD54LQ92698 747 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 SELENOSQ9BQE4 189 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 LZTS2Q9BRK4 669 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 ARFGEF2Q9Y6D5 1785 aa13.64□□□□□ -0.23
USHBP1-207ENST00000597928 PALM3A6NDB9 673 aaPredicted RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 KLRC4O43908 158 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 GH2P01242 217 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 HARSP12081 509 aaKnown RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 ATP2B4P23634 1241 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 CARSP49589 748 aaKnown RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 KCNH2Q12809 1159 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 PRKG1Q13976 671 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 TRADDQ15628 312 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 UNC13DQ70J99 1090 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 CCSER1Q9C0I3 900 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 DDX47Q9H0S4 455 aaKnown RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 JMJD4Q9H9V9 463 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 KBTBD4Q9NVX7 518 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 PPEF1O14829 653 aaPredicted RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 RAD17O75943 681 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 MYCLP12524 364 aaPredicted RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 ZC2HC1CQ53FD0 456 aaPredicted RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 SPATA20Q8TB22 786 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 FAM71BQ8TC56 605 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 TSGA10Q9BZW7 698 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 EXOC3O60645 756 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 KLRC1P26715 233 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 SSTR3P32745 418 aaPredicted RBP13.63□□□□□ -0.23
USHBP1-207ENST00000597928 ECM1Q16610 540 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 EXOC3L4Q17RC7 722 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 ZMYND12Q9H0C1 365 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 HDAC9Q9UKV0 1011 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 JRKLQ9Y4A0 524 aa13.63□□□□□ -0.23
USHBP1-207ENST00000597928 GOLGA8IPA6NC78 632 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 GOLGA8JA6NMD2 632 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 MNAT1P51948 309 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 SBK1Q52WX2 424 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 TAB3Q8N5C8 712 aaPredicted RBP13.62□□□□□ -0.23
USHBP1-207ENST00000597928 MTMR8Q96EF0 704 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 RTFDC1Q9BY42 306 aaPredicted RBP13.62□□□□□ -0.23
USHBP1-207ENST00000597928 ANO3Q9BYT9 981 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 TMOD2Q9NZR1 351 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 KRIT1O00522 736 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 NMT1P30419 496 aaKnown RBP13.62□□□□□ -0.23
USHBP1-207ENST00000597928 KCNA1Q09470 495 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 C4orf32Q8N8J7 132 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 RETREG2Q8NC44 543 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 GOLGA5Q8TBA6 731 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 EXOC4Q96A65 974 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 AK8Q96MA6 479 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 CAPS2Q9BXY5 557 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 COL1A1P02452 1464 aaPredicted RBP13.62□□□□□ -0.23
USHBP1-207ENST00000597928 A0A087X0T9 212 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 E7EVH7 732 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 IVLP07476 585 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 FAM228BP0C875 321 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 MYBP10242 640 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 SLCO1A2P46721 670 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 RCAN1P53805 252 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 FBXO11Q86XK2 927 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 PTPN22Q9Y2R2 807 aa13.62□□□□□ -0.23
USHBP1-207ENST00000597928 PDS5AQ29RF7 1337 aaKnown RBP13.61□□□□□ -0.23
USHBP1-207ENST00000597928 BAZ2AQ9UIF9 1905 aaKnown RBP13.61□□□□□ -0.23
USHBP1-207ENST00000597928 EPB41P11171 864 aaKnown RBP13.61□□□□□ -0.23
USHBP1-207ENST00000597928 MGARPQ8TDB4 240 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 PNMA5Q96PV4 448 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 PNMA6FA0A0J9YX94 578 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 CCDC169A6NNP5 214 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 ZNF263O14978 683 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 PBX1P40424 430 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 CASP4P49662 377 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 GUCY1A3Q02108 690 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 SEPT12Q8IYM1 358 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 ARL8AQ96BM9 186 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 SNX12Q9UMY4 172 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 HS2ST1Q7LGA3 356 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 TRAPPC11Q7Z392 1133 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 IFT20Q8IY31 132 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 CSRNP1Q96S65 589 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 LRRC27Q9C0I9 530 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 BLOC1S4Q9NUP1 217 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 GCNT4Q9P109 453 aa13.61□□□□□ -0.23
USHBP1-207ENST00000597928 EIF3CLB5ME19 914 aaKnown RBP13.6□□□□□ -0.23
USHBP1-207ENST00000597928 OPA1O60313 960 aa13.6□□□□□ -0.23
USHBP1-207ENST00000597928 GALNT17Q6IS24 598 aa13.6□□□□□ -0.23
USHBP1-207ENST00000597928 EIF3CQ99613 913 aaKnown RBP13.6□□□□□ -0.23
USHBP1-207ENST00000597928 MTA3Q9BTC8 594 aa13.6□□□□□ -0.23
USHBP1-207ENST00000597928 MMTAG2Q9BU76 263 aaKnown RBP13.6□□□□□ -0.23
USHBP1-207ENST00000597928 SH3GLB2Q9NR46 395 aa13.6□□□□□ -0.23
USHBP1-207ENST00000597928 UTRNP46939 3433 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms