RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CD207Q9UJ71 328 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 CCDC171Q6TFL3 1326 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 ADGRA3Q8IWK6 1321 aa11.82□□□□□ -0.52
TRIM28-210ENST00000597618 RALGAPA2Q2PPJ7 1873 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 H3BRB1 525 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 GRM6O15303 877 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 TREHO43280 583 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 DHX16O60231 1041 aaKnown RBP11.81□□□□□ -0.52
TRIM28-210ENST00000597618 TBX10O75333 385 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 RGS20O76081 388 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 CFBP00751 764 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 MMP1P03956 469 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 SMIM10L2AP0DMW4 78 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 SMIM10L2BP0DMW5 78 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 GNAT1P11488 350 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 UBA1P22314 1058 aaKnown RBP11.81□□□□□ -0.52
TRIM28-210ENST00000597618 BMPR1AP36894 532 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 NT5C2P49902 561 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 HSD17B4P51659 736 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 QRICH1Q2TAL8 776 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 ASPRV1Q53RT3 343 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 DGKHQ86XP1 1220 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 PNMA1Q8ND90 353 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 OTUD7AQ8TE49 926 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-210ENST00000597618 ESR2Q92731 530 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 PPP2R3CQ969Q6 453 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 EVI5LQ96CN4 794 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 PDCD2LQ9BRP1 358 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 RNF41Q9H4P4 317 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-210ENST00000597618 TUT1Q9H6E5 874 aaKnown RBP11.81□□□□□ -0.52
TRIM28-210ENST00000597618 KIAA1217Q5T5P2 1943 aa11.81□□□□□ -0.52
TRIM28-210ENST00000597618 MYO15AQ9UKN7 3530 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 SORBS3O60504 671 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 LINC00271P0C7V0 271 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 TGFB3P10600 412 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 MYCLP12524 364 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-210ENST00000597618 NDUFV1P49821 464 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 HAND2P61296 217 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 GHRHRQ02643 423 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 CCDC178Q5BJE1 867 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 IER5LQ5T953 404 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 C20orf194Q5TEA3 1177 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 CLP1Q92989 425 aaKnown RBP11.8□□□□□ -0.52
TRIM28-210ENST00000597618 PLVAPQ9BX97 442 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 KAT14Q9H8E8 782 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 MLXIPQ9HAP2 919 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 MAP3K20Q9NYL2 800 aaKnown RBP11.8□□□□□ -0.52
TRIM28-210ENST00000597618 RCAN3Q9UKA8 241 aa11.8□□□□□ -0.52
TRIM28-210ENST00000597618 NLRC5Q86WI3 1866 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 NOP56O00567 594 aaKnown RBP11.79□□□□□ -0.52
TRIM28-210ENST00000597618 EYA4O95677 639 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 LGALS2P05162 132 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 FOXK2Q01167 660 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 TCF15Q12870 199 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 MCMDC2Q4G0Z9 681 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 FAM26DQ5JW98 314 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 STOX1Q6ZVD7 989 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 VSIG10LQ86VR7 867 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 IQCA1Q86XH1 822 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 TBC1D10CQ8IV04 446 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 FBXL6Q8N531 539 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 ZKSCAN3Q9BRR0 538 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 AMNQ9BXJ7 453 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 OSBPL7Q9BZF2 842 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 IRF2BPLQ9H1B7 796 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 RNPEPQ9H4A4 650 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 IGFLR1Q9H665 355 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 RC3H2Q9HBD1 1191 aaKnown RBP11.79□□□□□ -0.52
TRIM28-210ENST00000597618 SPTBN4Q9H254 2564 aa11.79□□□□□ -0.52
TRIM28-210ENST00000597618 A0A0D9SFI3 127 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 LOC730098B7Z3J9 87 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 OPLAHO14841 1288 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 LINC01565O15544 149 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 GFRA3O60609 400 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 PARP1P09874 1014 aaKnown RBP11.78□□□□□ -0.52
TRIM28-210ENST00000597618 CCND2P30279 289 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 GTF2F1P35269 517 aaKnown RBP eCLIP11.78□□□□□ -0.522e-14■■■■□ 22.2
TRIM28-210ENST00000597618 ZXDAP98168 799 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 SP2Q02086 613 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 ADAM15Q13444 863 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 BTG3Q14201 252 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-210ENST00000597618 PGM5Q15124 567 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 TICAM2Q86XR7 235 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 SAMD3Q8N6K7 520 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 SMRP1Q8NCR6 262 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 MSLNLQ96KJ4 702 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 FAM227BQ96M60 508 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 USP26Q9BXU7 913 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 JMJD4Q9H9V9 463 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 ZNF215Q9UL58 517 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-210ENST00000597618 NEDD4P46934 1319 aa11.78□□□□□ -0.52
TRIM28-210ENST00000597618 CACNA1AO00555 2505 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 CSPG5O95196 566 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 SIGLEC14Q08ET2 396 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 COASYQ13057 564 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 CBX2Q14781 532 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-210ENST00000597618 GNPTABQ3T906 1256 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 NAALADL2Q58DX5 795 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 METTL7BQ6UX53 244 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 EFHBQ8N7U6 833 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms