RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 RNPEPQ9H4A4 650 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 MTUS1Q9ULD2 1270 aa14.41□□□□□ -0.1
UPF1-203ENST00000594504 A0A0C4DFX4 3053 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 ABHD14A-ACY1A0A1B0GW23 586 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 H3BRB1 525 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 TREHO43280 583 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 PRC1O43663 620 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 EIF5BO60841 1220 aaKnown RBP14.4□□□□□ -0.1
UPF1-203ENST00000594504 LGALS2P05162 132 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 SMIM10L2AP0DMW4 78 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 SMIM10L2BP0DMW5 78 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 TGFB3P10600 412 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 THPOP40225 353 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 IKBKEQ14164 716 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 CYFIP1Q7L576 1253 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 RAB11FIP4Q86YS3 637 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 RASEFQ8IZ41 740 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 DBF4BQ8NFT6 615 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 TMEM87BQ96K49 555 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 NEK1Q96PY6 1258 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 TUT1Q9H6E5 874 aaKnown RBP14.4□□□□□ -0.1
UPF1-203ENST00000594504 LY9Q9HBG7 655 aa14.4□□□□□ -0.1
UPF1-203ENST00000594504 C17orf102A2RUQ5 167 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 SPATA31C2B4DYI2 1134 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 LGR5O75473 907 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 GJB5O95377 273 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 PLEKHA8P1O95397 391 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 PARNO95453 639 aaKnown RBP14.39□□□□□ -0.11
UPF1-203ENST00000594504 RXRAP19793 462 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 SP4Q02446 784 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 TRAF1Q13077 416 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 UTP14CQ5TAP6 766 aaKnown RBP14.39□□□□□ -0.11
UPF1-203ENST00000594504 ZNF654Q8IZM8 581 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 SRBD1Q8N5C6 995 aaKnown RBP14.39□□□□□ -0.11
UPF1-203ENST00000594504 IL27Q8NEV9 243 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 SMARCC2Q8TAQ2 1214 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 GDPD5Q8WTR4 605 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 ATP6V0A1Q93050 837 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 USP26Q9BXU7 913 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 SETD4Q9NVD3 440 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 RAPGEFL1Q9UHV5 662 aa14.39□□□□□ -0.11
UPF1-203ENST00000594504 hCG_1642624A0A1W2PR95 340 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 RSPH10B2B2RC85 870 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 MEIS2O14770 477 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 HMGB1P09429 215 aaKnown RBP14.38□□□□□ -0.11
UPF1-203ENST00000594504 RSPH10BP0C881 870 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 ICAM3P32942 547 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 ADCK5Q3MIX3 580 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 SERINC5Q86VE9 423 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 TRIM50Q86XT4 487 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 TMTC2Q8N394 836 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 CTCFLQ8NI51 663 aaPredicted RBP14.38□□□□□ -0.11
UPF1-203ENST00000594504 INPP4AQ96PE3 977 aaPredicted RBP14.38□□□□□ -0.11
UPF1-203ENST00000594504 RAD9AQ99638 391 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 GPR20Q99678 358 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 SUGCTQ9HAC7 445 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 SNX14Q9Y5W7 946 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 FRMPD4Q14CM0 1322 aa14.38□□□□□ -0.11
UPF1-203ENST00000594504 PRRC2BQ5JSZ5 2229 aaKnown RBP14.37□□□□□ -0.11
UPF1-203ENST00000594504 COL4A4P53420 1690 aaPredicted RBP14.37□□□□□ -0.11
UPF1-203ENST00000594504 LINC01553A4QN01 128 aa14.37□□□□□ -0.11
UPF1-203ENST00000594504 NOP56O00567 594 aaKnown RBP14.37□□□□□ -0.11
UPF1-203ENST00000594504 SH2B2O14492 632 aaPredicted RBP14.37□□□□□ -0.11
UPF1-203ENST00000594504 CTSHP09668 335 aa14.37□□□□□ -0.11
UPF1-203ENST00000594504 NEDD9Q14511 834 aa14.37□□□□□ -0.11
UPF1-203ENST00000594504 NFXL1Q6ZNB6 911 aa14.37□□□□□ -0.11
UPF1-203ENST00000594504 DHX32Q7L7V1 743 aaKnown RBP14.37□□□□□ -0.11
UPF1-203ENST00000594504 CCDC82Q8N4S0 544 aa14.37□□□□□ -0.11
UPF1-203ENST00000594504 RRP36Q96EU6 259 aaKnown RBP14.37□□□□□ -0.11
UPF1-203ENST00000594504 LRRC2Q9BYS8 371 aa14.37□□□□□ -0.11
UPF1-203ENST00000594504 FIBPO43427 364 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 ATP9AO75110 1047 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 COL9A1P20849 921 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 PSMA5P28066 241 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 HOXC8P31273 242 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 LIFRP42702 1097 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 ERVK-21P61565 698 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 EXOSC10Q01780 885 aaKnown RBP14.36□□□□□ -0.11
UPF1-203ENST00000594504 GNPTABQ3T906 1256 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 METTL7BQ6UX53 244 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 MYOCDQ8IZQ8 938 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 CUL5Q93034 780 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 TGS1Q96RS0 853 aaKnown RBP14.36□□□□□ -0.11
UPF1-203ENST00000594504 C17orf80Q9BSJ5 609 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 SPZ1Q9BXG8 430 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 GTF3C3Q9Y5Q9 886 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 VCANP13611 3396 aa14.36□□□□□ -0.11
UPF1-203ENST00000594504 CCDC69A6NI79 296 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 STAM2O75886 525 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 DDAH1O94760 285 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 UPP2O95045 317 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 KIF5BP33176 963 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 MKRN4PQ13434 485 aaPredicted RBP14.35□□□□□ -0.11
UPF1-203ENST00000594504 AAK1Q2M2I8 961 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 PLEKHG4Q58EX7 1191 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 PCNX4Q63HM2 1172 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 HLA-CQ95604 372 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 JAKMIP1Q96N16 626 aaKnown RBP14.35□□□□□ -0.11
UPF1-203ENST00000594504 MAP3K14Q99558 947 aa14.35□□□□□ -0.11
UPF1-203ENST00000594504 PKD2L1Q9P0L9 805 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms