RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PGK2P07205 417 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 RPA1P27694 616 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 JAK3P52333 1124 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 FCGRTP55899 365 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 SEMA3FQ13275 785 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 NEDD9Q14511 834 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 EPHA7Q15375 998 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 SPECC1Q5M775 1068 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 RRAGBQ5VZM2 374 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 ZNF746Q6NUN9 644 aaPredicted RBP17.17■□□□□ 0.34
SS18-215ENST00000580642 KRBA2Q6ZNG9 492 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 CEP57L1Q8IYX8 460 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 CNNM3Q8NE01 707 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 USP6NLQ92738 828 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 TNMDQ9H2S6 317 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 R3HDMLQ9H3Y0 253 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 TUFT1Q9NNX1 390 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 VTA1Q9NP79 307 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 THSD7BQ9C0I4 1608 aa17.17■□□□□ 0.34
SS18-215ENST00000580642 TNPO2O14787 897 aaKnown RBP17.16■□□□□ 0.34
SS18-215ENST00000580642 GNRH1P01148 92 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 XRCC5P13010 732 aaKnown RBP17.16■□□□□ 0.34
SS18-215ENST00000580642 RGS2P41220 211 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 LACTBP83111 547 aaPredicted RBP17.16■□□□□ 0.34
SS18-215ENST00000580642 KIF22Q14807 665 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 E2F4Q16254 413 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 OLFML2BQ68BL8 750 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 USP49Q70CQ1 688 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 SMAP1Q8IYB5 467 aaPredicted RBP17.16■□□□□ 0.34
SS18-215ENST00000580642 SNX29Q8TEQ0 813 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 CDK5RAP3Q96JB5 506 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 MMTAG2Q9BU76 263 aaKnown RBP17.16■□□□□ 0.34
SS18-215ENST00000580642 LRRC27Q9C0I9 530 aa17.16■□□□□ 0.34
SS18-215ENST00000580642 RBM47A0AV96 593 aaKnown RBP17.15■□□□□ 0.34
SS18-215ENST00000580642 POTEMA6NI47 508 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 WDR64B1ANS9 1081 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 ACTN4O43707 911 aaKnown RBP17.15■□□□□ 0.34
SS18-215ENST00000580642 DKC1O60832 514 aaKnown RBP eCLIP17.15■□□□□ 0.34
SS18-215ENST00000580642 KCNA2P16389 499 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 STAT6P42226 847 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 ZNF445P59923 1031 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 ITGB3BPQ13352 177 aaPredicted RBP17.15■□□□□ 0.34
SS18-215ENST00000580642 ARHGEF6Q15052 776 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 ZSCAN23Q3MJ62 389 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 LONRF3Q496Y0 759 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 TRMT44Q8IYL2 757 aaKnown RBP17.15■□□□□ 0.34
SS18-215ENST00000580642 RASSF8Q8NHQ8 419 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 MAML3Q96JK9 1138 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 HSD17B14Q9BPX1 270 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 RNF186Q9NXI6 227 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 NRBP1Q9UHY1 535 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 GJD2Q9UKL4 321 aa17.15■□□□□ 0.34
SS18-215ENST00000580642 AMPD3Q01432 767 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 SP3Q02447 781 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 TMEM119Q4V9L6 283 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 NCAPH2Q6IBW4 605 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 ARMCX2Q7L311 632 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 SCFD2Q8WU76 684 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 APBA2Q99767 749 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 TINF2Q9BSI4 451 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 ABHD16BQ9H3Z7 469 aa17.14■□□□□ 0.33
SS18-215ENST00000580642 LCTP09848 1927 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 PP2D1A8MPX8 630 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 XRCC6P12956 609 aaKnown RBP eCLIP17.13■□□□□ 0.33
SS18-215ENST00000580642 HSPA6P17066 643 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 CCT6AP40227 531 aaKnown RBP17.13■□□□□ 0.33
SS18-215ENST00000580642 TTLL4Q14679 1199 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 KARSQ15046 597 aaKnown RBP17.13■□□□□ 0.33
SS18-215ENST00000580642 TPRNQ4KMQ1 711 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 PDXDC2PQ6P474 469 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 SH3RF1Q7Z6J0 888 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 DHX58Q96C10 678 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 EIF2AK1Q9BQI3 630 aaKnown RBP17.13■□□□□ 0.33
SS18-215ENST00000580642 UNC45AQ9H3U1 944 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 JPH1Q9HDC5 661 aaPredicted RBP17.13■□□□□ 0.33
SS18-215ENST00000580642 KBTBD4Q9NVX7 518 aa17.13■□□□□ 0.33
SS18-215ENST00000580642 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.13■□□□□ 0.33
SS18-215ENST00000580642 PLXNB2O15031 1838 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 A0A087X0B3 334 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 NKRFO15226 690 aaKnown RBP eCLIP17.12■□□□□ 0.33
SS18-215ENST00000580642 ATP9AO75110 1047 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 LYPLA2O95372 231 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 IGHA2P01877 340 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 P4HBP07237 508 aaKnown RBP17.12■□□□□ 0.33
SS18-215ENST00000580642 HOXD10P28358 340 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 CDC25AP30304 524 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 PSMC4P43686 418 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 MDM2Q00987 491 aaPredicted RBP17.12■□□□□ 0.33
SS18-215ENST00000580642 MAP2K1Q02750 393 aaPredicted RBP17.12■□□□□ 0.33
SS18-215ENST00000580642 GRB10Q13322 594 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 CNNM4Q6P4Q7 775 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 METTL7BQ6UX53 244 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 MIER3Q7Z3K6 550 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 PDILTQ8N807 584 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 GTPBP4Q9BZE4 634 aaKnown RBP17.12■□□□□ 0.33
SS18-215ENST00000580642 SLC9A2Q9UBY0 812 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 SERTAD1Q9UHV2 236 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 DDX41Q9UJV9 622 aaKnown RBP17.12■□□□□ 0.33
SS18-215ENST00000580642 PCDHA10Q9Y5I2 948 aa17.12■□□□□ 0.33
SS18-215ENST00000580642 SMC2O95347 1197 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms