RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 WASF3Q9UPY6 502 aa7.65□□□□□ -1.18
SMCHD1-202ENST00000577300 CYP1A1P04798 512 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 INSRRP14616 1297 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 MLLT6P55198 1093 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 PLEKHH3Q7Z736 793 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 ST13P5Q8NFI4 369 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 MBD6Q96DN6 1003 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 ZFYVE21Q9BQ24 234 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 JAM3Q9BX67 310 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 C1QTNF3Q9BXJ4 246 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 TMEM168Q9H0V1 697 aa7.64□□□□□ -1.19
SMCHD1-202ENST00000577300 B4GALT3O60512 393 aa7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 OTOP3Q7RTS5 596 aa7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 PIP4K2CQ8TBX8 421 aa7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 ZCCHC14Q8WYQ9 949 aaKnown RBP7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 ZNF428Q96B54 188 aa7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 KRTAP3-1Q9BYR8 98 aa7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 PDGFDQ9GZP0 370 aaPredicted RBP7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 ARHGEF4Q9NR80 690 aa7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 PPARGC1AQ9UBK2 798 aaKnown RBP7.63□□□□□ -1.19
SMCHD1-202ENST00000577300 KIZQ2M2Z5 673 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 CPZQ66K79 652 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 PKN3Q6P5Z2 889 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 LBX2Q6XYB7 198 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 PROSER1Q86XN7 944 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 OSBP2Q969R2 916 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 LOXL4Q96JB6 756 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 CROTQ9UKG9 612 aa7.62□□□□□ -1.19
SMCHD1-202ENST00000577300 ZNF536O15090 1300 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 SLC27A2O14975 620 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 PRODHO43272 600 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 LAMTOR5O43504 91 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 PABPC1P11940 636 aaKnown RBP7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 GRK2P25098 689 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 GRK3P35626 688 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 RAB33AQ14088 237 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 NTRK3Q16288 839 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 GLB1LQ6UWU2 654 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 TMC5Q6UXY8 1006 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 LRRC47Q8N1G4 583 aaKnown RBP7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 UHMK1Q8TAS1 419 aaKnown RBP7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 CLEC4DQ8WXI8 215 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 ZNF669Q96BR6 464 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 NUB1Q9Y5A7 615 aa7.61□□□□□ -1.19
SMCHD1-202ENST00000577300 C1QTNF3-AMACRE9PGA6 284 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 GPR85P60893 370 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 SPIRE1Q08AE8 756 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 PUM1Q14671 1186 aaKnown RBP eCLIP7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 HABP4Q5JVS0 413 aaKnown RBP7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 STYK1Q6J9G0 422 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 KCNT2Q6UVM3 1135 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 NSMFQ6X4W1 530 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 KLHL36Q8N4N3 616 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 DTX3Q8N9I9 347 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 C8orf49Q96NF6 230 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 DLL4Q9NR61 685 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 IGSF5Q9NSI5 407 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 FTSJ1Q9UET6 329 aa7.6□□□□□ -1.19
SMCHD1-202ENST00000577300 TRAV20A0A0B4J274 112 aa7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 COL6A1P12109 1028 aa7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 VASNQ6EMK4 673 aa7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 IFNL3Q8IZI9 196 aa7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 PPP4R1LQ9P1A2 415 aa7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 RBPJLQ9UBG7 517 aa7.59□□□□□ -1.19
SMCHD1-202ENST00000577300 CHGBP05060 677 aa7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 FAHP16930 419 aa7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 ZNF20P17024 532 aa7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 GRIN1Q05586 938 aa7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 IFRD2Q12894 506 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 TUSC3Q13454 348 aa7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 PAN2Q504Q3 1202 aaKnown RBP7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 TRMT10BQ6PF06 316 aaKnown RBP7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 DPH6Q7L8W6 267 aa7.58□□□□□ -1.2
SMCHD1-202ENST00000577300 GNAT1P11488 350 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 EPHB4P54760 987 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 PPP2CBP62714 309 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 PPP2CAP67775 309 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 NFATC3Q12968 1075 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 LIMS2Q7Z4I7 341 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 KBTBD2Q8IY47 623 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 CHST13Q8NET6 341 aa7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 BARX1Q9HBU1 254 aaPredicted RBP7.57□□□□□ -1.2
SMCHD1-202ENST00000577300 NKRFO15226 690 aaKnown RBP eCLIP7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 SOD2P04179 222 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 COL6A2P12110 1019 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 EPHA5P54756 1037 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 SMAD2Q15796 467 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 ARHGEF18Q6ZSZ5 1173 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 RBM12BQ8IXT5 1001 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 IGDCC4Q8TDY8 1250 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 DVL3Q92997 716 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 KCNJ15Q99712 375 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 TRIM55Q9BYV6 548 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 ADAM29Q9UKF5 820 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 DSEQ9UL01 958 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 MSRB2Q9Y3D2 182 aa7.56□□□□□ -1.2
SMCHD1-202ENST00000577300 FAM47E-STBD1D6RA91 191 aa7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 KLHL18O94889 574 aa7.55□□□□□ -1.2
SMCHD1-202ENST00000577300 LTFP02788 710 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms