RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 TCEAL9Q9UHQ7 104 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 SYNRGQ9UMZ2 1314 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 DOCK5Q9H7D0 1870 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 MARCH6O60337 910 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 FARP2O94887 1054 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 MYCP01106 439 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 GJC2Q5T442 439 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 LRCH2Q5VUJ6 765 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 LHX8Q68G74 356 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 OR6J1Q8NGC5 347 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 MLXIPQ9HAP2 919 aa19.32■□□□□ 0.68
NUP88-210ENST00000574867 JPH1Q9HDC5 661 aaPredicted RBP19.32■□□□□ 0.68
NUP88-210ENST00000574867 GAS7O60861 476 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 OR52Z1P0C646 297 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 GJA9P57773 515 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 TMEM63BQ5T3F8 832 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 CYFIP1Q7L576 1253 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 HAS1Q92839 578 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 COPS5Q92905 334 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 MTMR9Q96QG7 549 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 TEKT3Q9BXF9 490 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 POLR3EQ9NVU0 708 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 CENPFP49454 3210 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 DHX15O43143 795 aaKnown RBP19.31■□□□□ 0.68
NUP88-210ENST00000574867 GJB1P08034 283 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 CAPN2P17655 700 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 NKX3-2P78367 333 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 PTGDRQ13258 359 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 ANO1Q5XXA6 986 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 PPTC7Q8NI37 304 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 DEFB118Q96PH6 123 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 SLC9A2Q9UBY0 812 aa19.31■□□□□ 0.68
NUP88-210ENST00000574867 DYNC1LI2O43237 492 aaPredicted RBP19.3■□□□□ 0.68
NUP88-210ENST00000574867 PRPHP41219 470 aa19.3■□□□□ 0.68
NUP88-210ENST00000574867 CPT1AP50416 773 aa19.3■□□□□ 0.68
NUP88-210ENST00000574867 ATP2C1P98194 919 aaPredicted RBP19.3■□□□□ 0.68
NUP88-210ENST00000574867 KRT76Q01546 638 aa19.3■□□□□ 0.68
NUP88-210ENST00000574867 SF3A1Q15459 793 aaKnown RBP19.3■□□□□ 0.68
NUP88-210ENST00000574867 BRDTQ58F21 947 aaPredicted RBP19.3■□□□□ 0.68
NUP88-210ENST00000574867 SPATA33Q96N06 139 aa19.3■□□□□ 0.68
NUP88-210ENST00000574867 TMEM106CQ9BVX2 250 aa19.3■□□□□ 0.68
NUP88-210ENST00000574867 TMEM60Q9H2L4 133 aa19.3■□□□□ 0.68
NUP88-210ENST00000574867 ADAMTS4O75173 837 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 PSMD10O75832 226 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 CST5P28325 142 aaPredicted RBP19.29■□□□□ 0.68
NUP88-210ENST00000574867 C4orf32Q8N8J7 132 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 USP28Q96RU2 1077 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 NOP56O00567 594 aaKnown RBP19.29■□□□□ 0.68
NUP88-210ENST00000574867 C6orf222P0C671 652 aaPredicted RBP19.29■□□□□ 0.68
NUP88-210ENST00000574867 ZNF746Q6NUN9 644 aaPredicted RBP19.29■□□□□ 0.68
NUP88-210ENST00000574867 RNF180Q86T96 592 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 CFAP45Q9UL16 551 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 CLIC4Q9Y696 253 aa19.29■□□□□ 0.68
NUP88-210ENST00000574867 MORC2Q9Y6X9 1032 aaPredicted RBP19.29■□□□□ 0.68
NUP88-210ENST00000574867 PTGS1P23219 599 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 NASPP49321 788 aaPredicted RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 PPP2R5CQ13362 524 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 FSCN1Q16658 493 aaKnown RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 ARL6IP4Q66PJ3 421 aaKnown RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 SMAP1Q8IYB5 467 aaPredicted RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 ARRDC4Q8NCT1 418 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 U2AF1L4Q8WU68 220 aaKnown RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 UIMC1Q96RL1 719 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 FTOQ9C0B1 505 aaKnown RBP eCLIP19.28■□□□□ 0.68
NUP88-210ENST00000574867 OGDHLQ9ULD0 1010 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 PCDHA12Q9UN75 941 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 ELP1O95163 1332 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 A6NJR5 290 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 DDX39AO00148 427 aaKnown RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 SGPL1O95470 568 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 PGK1P00558 417 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 TMEM266Q2M3C6 531 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 HSDL1Q3SXM5 330 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 AFG1LQ8WV93 481 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 CRISPLD2Q9H0B8 497 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 BCAS3Q9H6U6 928 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 TTC12Q9H892 705 aaPredicted RBP19.28■□□□□ 0.68
NUP88-210ENST00000574867 VAV3Q9UKW4 847 aa19.28■□□□□ 0.68
NUP88-210ENST00000574867 ZEB2O60315 1214 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 SORBS3O60504 671 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 YEATS4O95619 227 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 MMP3P08254 477 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 SFNP31947 248 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 TXKP42681 527 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 GJA8P48165 433 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 JAK3P52333 1124 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 KRT85P78386 507 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 DNM1Q05193 864 aaKnown RBP19.27■□□□□ 0.68
NUP88-210ENST00000574867 FOXD4L6Q3SYB3 417 aaPredicted RBP19.27■□□□□ 0.68
NUP88-210ENST00000574867 FOXD4L3Q6VB84 417 aaPredicted RBP19.27■□□□□ 0.68
NUP88-210ENST00000574867 RDM1Q8NG50 284 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 GJA10Q969M2 543 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 GPR20Q99678 358 aa19.27■□□□□ 0.68
NUP88-210ENST00000574867 POTEFA5A3E0 1075 aa19.26■□□□□ 0.67
NUP88-210ENST00000574867 CTAGE5O15320 804 aa19.26■□□□□ 0.67
NUP88-210ENST00000574867 HOXD8P13378 290 aaPredicted RBP19.26■□□□□ 0.67
NUP88-210ENST00000574867 ACTR2P61160 394 aa19.26■□□□□ 0.67
NUP88-210ENST00000574867 SP4Q02446 784 aa19.26■□□□□ 0.67
NUP88-210ENST00000574867 CEBPZQ03701 1054 aaKnown RBP19.26■□□□□ 0.67
NUP88-210ENST00000574867 PTPAQ15257 358 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms