RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ARNTL2Q8WYA1 636 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 SPATA33Q96N06 139 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 INPP4AQ96PE3 977 aaPredicted RBP7.79□□□□□ -1.16
VPS53-213ENST00000572334 UHRF1Q96T88 793 aaPredicted RBP7.79□□□□□ -1.16
VPS53-213ENST00000572334 MYL10Q9BUA6 226 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 KATNAL1Q9BW62 490 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 LY9Q9HBG7 655 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 C5orf42Q9H799 3197 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 ABHD14A-ACY1A0A1B0GW23 586 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 GCOM1H8Y6P7 765 aaPredicted RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 MEIS2O14770 477 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 TREHO43280 583 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 TLL1O43897 1013 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 PARNO95453 639 aaKnown RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 LGALS2P05162 132 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 POLR2MP0CAP2 368 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 SMIM10L2AP0DMW4 78 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 SMIM10L2BP0DMW5 78 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 ERVK-21P61565 698 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 IRX6P78412 446 aaPredicted RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 WTAPQ15007 396 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 PLEKHG4Q58EX7 1191 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 KCNV1Q6PIU1 500 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 USP17L6PQ6QN14 398 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 SRBD1Q8N5C6 995 aaKnown RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 CCDC155Q8N6L0 562 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 DBF4BQ8NFT6 615 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 NCOA7Q8NI08 942 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 GDPD5Q8WTR4 605 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 MAP3K14Q99558 947 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 GPR20Q99678 358 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 SPZ1Q9BXG8 430 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 LSG1Q9H089 658 aaKnown RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 RNPEPQ9H4A4 650 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 SUGCTQ9HAC7 445 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 RAPGEFL1Q9UHV5 662 aa7.78□□□□□ -1.16
VPS53-213ENST00000572334 RBM8AQ9Y5S9 174 aaKnown RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 MYH9P35579 1960 aaKnown RBP7.78□□□□□ -1.16
VPS53-213ENST00000572334 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.77□□□□□ -1.17
VPS53-213ENST00000572334 LINC01553A4QN01 128 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 H3BRB1 525 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 PIK3CDO00329 1044 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 ATP9AO75110 1047 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 LGR5O75473 907 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 PLEKHA8P1O95397 391 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 KCNJ6P48051 423 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 HTRA4P83105 476 aaPredicted RBP7.77□□□□□ -1.17
VPS53-213ENST00000572334 TRDNQ13061 729 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 METTL7BQ6UX53 244 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 CYFIP1Q7L576 1253 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 TRIM50Q86XT4 487 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 ZNF654Q8IZM8 581 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 CMTR1Q8N1G2 835 aaKnown RBP7.77□□□□□ -1.17
VPS53-213ENST00000572334 RUFY2Q8WXA3 655 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 PIBF1Q8WXW3 757 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 KHSRPQ92945 711 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS53-213ENST00000572334 RAD9AQ99638 391 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 TUT1Q9H6E5 874 aaKnown RBP7.77□□□□□ -1.17
VPS53-213ENST00000572334 RTEL1Q9NZ71 1219 aa7.77□□□□□ -1.17
VPS53-213ENST00000572334 RBM19Q9Y4C8 960 aaKnown RBP7.77□□□□□ -1.17
VPS53-213ENST00000572334 C17orf102A2RUQ5 167 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 RSPH10B2B2RC85 870 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 KIF28PB7ZC32 967 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 SH2B2O14492 632 aaPredicted RBP7.76□□□□□ -1.17
VPS53-213ENST00000572334 GTPBP6O43824 516 aaPredicted RBP7.76□□□□□ -1.17
VPS53-213ENST00000572334 STAM2O75886 525 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 DDAH1O94760 285 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 LINC00271P0C7V0 271 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 RSPH10BP0C881 870 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 KCNA2P16389 499 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 RXRAP19793 462 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 SMARCA1P28370 1054 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 THPOP40225 353 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 IKBKEQ14164 716 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 NECTIN1Q15223 517 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 FAM26DQ5JW98 314 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 PCNX4Q63HM2 1172 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 FAM117BQ6P1L5 589 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 CATIPQ7Z7H3 387 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 RALYLQ86SE5 291 aaKnown RBP7.76□□□□□ -1.17
VPS53-213ENST00000572334 SKAP1Q86WV1 359 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 ATP6V0A1Q93050 837 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 SENP7Q9BQF6 1050 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 C17orf80Q9BSJ5 609 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 MTA3Q9BTC8 594 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 USP26Q9BXU7 913 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 MLXIPQ9HAP2 919 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 SETD4Q9NVD3 440 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 LMCD1Q9NZU5 365 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 MTUS1Q9ULD2 1270 aa7.76□□□□□ -1.17
VPS53-213ENST00000572334 FNDC1Q4ZHG4 1894 aaPredicted RBP7.76□□□□□ -1.17
VPS53-213ENST00000572334 PLXNA4Q9HCM2 1894 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.75□□□□□ -1.17
VPS53-213ENST00000572334 GSTTP1A0A1W2PQM5 241 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 hCG_1642624A0A1W2PR95 340 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 ERICH2A1L162 156 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 SLC27A2O14975 620 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 FIBPO43427 364 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 PRC1O43663 620 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 EFCAB14O75071 495 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms