RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ZMYND10O75800 440 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 LMAN1P49257 510 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 MARSP56192 900 aaKnown RBP25.19■■□□□ 1.62
VPS53-211ENST00000571805 ITIH3Q06033 890 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 GFPT1Q06210 699 aaPredicted RBP25.19■■□□□ 1.62
VPS53-211ENST00000571805 CCDC40Q4G0X9 1142 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 IQCEQ6IPM2 695 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 POTEBQ6S5H4 581 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 CCDC65Q8IXS2 484 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 CEP72Q9P209 647 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 PCDHA1Q9Y5I3 950 aa25.19■■□□□ 1.62
VPS53-211ENST00000571805 ZC3H4Q9UPT8 1303 aaKnown RBP25.18■■□□□ 1.62
VPS53-211ENST00000571805 SLC26A4O43511 780 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 KCTD10Q9H3F6 313 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 RBAK-RBAKDNI3L0D1 243 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 TLR2O60603 784 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 MYBL2P10244 700 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 CYP11B2P19099 503 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 SHROOM1Q2M3G4 852 aaPredicted RBP25.18■■□□□ 1.62
VPS53-211ENST00000571805 HSP90B2PQ58FF3 399 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 TRIM59Q8IWR1 403 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 SCFD1Q8WVM8 642 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 SYN2Q92777 582 aaPredicted RBP25.18■■□□□ 1.62
VPS53-211ENST00000571805 DRC1Q96MC2 740 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 ANO3Q9BYT9 981 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 HPCAL4Q9UM19 191 aa25.18■■□□□ 1.62
VPS53-211ENST00000571805 EEF2P13639 858 aaKnown RBP25.17■■□□□ 1.62
VPS53-211ENST00000571805 GPBP1Q86WP2 473 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 NELFCDQ8IXH7 590 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 OSBPL9Q96SU4 736 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 NLRC4Q9NPP4 1024 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 FRMD3A2A2Y4 597 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 MED24O75448 989 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 CRKP46108 304 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 CACNB1Q02641 598 aaPredicted RBP25.17■■□□□ 1.62
VPS53-211ENST00000571805 ARSHQ5FYA8 562 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 HERC4Q5GLZ8 1057 aaPredicted RBP25.17■■□□□ 1.62
VPS53-211ENST00000571805 MUM1L1Q5H9M0 696 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 FAM83BQ5T0W9 1011 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 ZC3H3Q8IXZ2 948 aaKnown RBP25.17■■□□□ 1.62
VPS53-211ENST00000571805 DCAF4Q8WV16 495 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 CRYGNQ8WXF5 182 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 ALS2CR12Q96Q35 445 aa25.17■■□□□ 1.62
VPS53-211ENST00000571805 ATAD5Q96QE3 1844 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 MEIS2O14770 477 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 GNA14O95837 355 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 SYF2O95926 243 aaKnown RBP25.16■■□□□ 1.62
VPS53-211ENST00000571805 CDC37Q16543 378 aaPredicted RBP25.16■■□□□ 1.62
VPS53-211ENST00000571805 P2RX7Q99572 595 aaKnown RBP25.16■■□□□ 1.62
VPS53-211ENST00000571805 NUCKS1Q9H1E3 243 aaKnown RBP25.16■■□□□ 1.62
VPS53-211ENST00000571805 NYAP2Q9P242 653 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 AFF2P51816 1311 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 STAT3P40763 770 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 SLC1A4P43007 532 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 SLC12A3P55017 1021 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 RASSF7Q02833 373 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 NFRKBQ6P4R8 1299 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 SIAH1Q8IUQ4 282 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 ANKRD13CQ8N6S4 541 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 EMILIN3Q9NT22 766 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 HYOU1Q9Y4L1 999 aa25.16■■□□□ 1.62
VPS53-211ENST00000571805 NRXN2Q9P2S2 1712 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 FAM196BA6NMK8 535 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 TCP1P17987 556 aaKnown RBP25.15■■□□□ 1.62
VPS53-211ENST00000571805 TNNT3P45378 269 aaPredicted RBP25.15■■□□□ 1.62
VPS53-211ENST00000571805 SLFN13Q68D06 897 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 MOXD1Q6UVY6 613 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 SPATA4Q8NEY3 305 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 ZDHHC15Q96MV8 337 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 PHACTR2O75167 634 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 NPR1P16066 1061 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 SPIRE1Q08AE8 756 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 SFMBT2Q5VUG0 894 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 RNF10Q8N5U6 811 aaKnown RBP25.15■■□□□ 1.62
VPS53-211ENST00000571805 LSM14BQ9BX40 385 aaKnown RBP25.15■■□□□ 1.62
VPS53-211ENST00000571805 KCNQ5Q9NR82 932 aa25.15■■□□□ 1.62
VPS53-211ENST00000571805 DDTLA6NHG4 134 aaPredicted RBP25.14■■□□□ 1.62
VPS53-211ENST00000571805 SERPING1P05155 500 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 ZSCAN26Q16670 478 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 SLC9C1Q4G0N8 1177 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 GSPT2Q8IYD1 628 aaKnown RBP25.14■■□□□ 1.62
VPS53-211ENST00000571805 SLFN12Q8IYM2 578 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 ETNPPLQ8TBG4 499 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 TLR10Q9BXR5 811 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 KANSL2Q9H9L4 492 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 PCDHAC2Q9Y5I4 1007 aa25.14■■□□□ 1.62
VPS53-211ENST00000571805 UTP18Q9Y5J1 556 aaKnown RBP eCLIP25.14■■□□□ 1.62
VPS53-211ENST00000571805 PITPNM2Q9BZ72 1349 aa25.14■■□□□ 1.61
VPS53-211ENST00000571805 RAD21O60216 631 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 CACNB3P54284 484 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 POLR2FP61218 127 aaKnown RBP25.13■■□□□ 1.61
VPS53-211ENST00000571805 RAD51AP2Q09MP3 1159 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 EZH2Q15910 746 aaKnown RBP25.13■■□□□ 1.61
VPS53-211ENST00000571805 MEX3CQ5U5Q3 659 aaKnown RBP25.13■■□□□ 1.61
VPS53-211ENST00000571805 KLHDC7AQ5VTJ3 777 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 LRRC1Q9BTT6 524 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 DHX36Q9H2U1 1008 aaKnown RBP25.13■■□□□ 1.61
VPS53-211ENST00000571805 APBA1Q02410 837 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 AP3B2Q13367 1082 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 CERKLQ49MI3 558 aaPredicted RBP25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms