RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CSPG5O95196 566 aa21.27■■□□□ 1
CLK3-227ENST00000570296 IFNL3Q8IZI9 196 aa21.27■■□□□ 1
CLK3-227ENST00000570296 NACAP1Q9BZK3 213 aa21.27■■□□□ 1
CLK3-227ENST00000570296 MAF1Q9H063 256 aa21.27■■□□□ 1
CLK3-227ENST00000570296 IL17RBQ9NRM6 502 aa21.27■■□□□ 1
CLK3-227ENST00000570296 TSPY2A6NKD2 308 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 RAB11FIP3O75154 756 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 PPFIA4O75335 1185 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 GLP2RO95838 553 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 NOVP48745 357 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 STXBP2Q15833 593 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 NAALADL2Q58DX5 795 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 SUSD6Q92537 303 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 ATP6V0A1Q93050 837 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 IWS1Q96ST2 819 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 BARX2Q9UMQ3 279 aaPredicted RBP21.26■□□□□ 0.99
CLK3-227ENST00000570296 TTC3P53804 2025 aa21.26■□□□□ 0.99
CLK3-227ENST00000570296 C17orf102A2RUQ5 167 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 RLBP1P12271 317 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 HOXC8P31273 242 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 PPARAQ07869 468 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 ADGRD2Q7Z7M1 963 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 ZBTB33Q86T24 672 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 TMEM105Q8N8V8 129 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 NSUN6Q8TEA1 469 aaKnown RBP21.25■□□□□ 0.99
CLK3-227ENST00000570296 KIAA1671Q9BY89 1806 aa21.25■□□□□ 0.99
CLK3-227ENST00000570296 NMT2O60551 498 aa21.24■□□□□ 0.99
CLK3-227ENST00000570296 RGS20O76081 388 aa21.24■□□□□ 0.99
CLK3-227ENST00000570296 NRIP1P48552 1158 aa21.24■□□□□ 0.99
CLK3-227ENST00000570296 BTG3Q14201 252 aaPredicted RBP21.24■□□□□ 0.99
CLK3-227ENST00000570296 DGLUCYQ7Z3D6 616 aa21.24■□□□□ 0.99
CLK3-227ENST00000570296 OSBPL7Q9BZF2 842 aa21.24■□□□□ 0.99
CLK3-227ENST00000570296 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.24■□□□□ 0.99
CLK3-227ENST00000570296 RNF113AO15541 343 aaKnown RBP21.23■□□□□ 0.99
CLK3-227ENST00000570296 CTSHP09668 335 aa21.23■□□□□ 0.99
CLK3-227ENST00000570296 DNAJB1P25685 340 aa21.23■□□□□ 0.99
CLK3-227ENST00000570296 UBALD2Q8IYN6 164 aa21.23■□□□□ 0.99
CLK3-227ENST00000570296 KBTBD3Q8NAB2 608 aa21.23■□□□□ 0.99
CLK3-227ENST00000570296 SPPL3Q8TCT6 385 aa21.23■□□□□ 0.99
CLK3-227ENST00000570296 ZNF689Q96CS4 500 aaPredicted RBP21.23■□□□□ 0.99
CLK3-227ENST00000570296 MYO10Q9HD67 2058 aa21.23■□□□□ 0.99
CLK3-227ENST00000570296 FSD2A1L4K1 749 aa21.22■□□□□ 0.99
CLK3-227ENST00000570296 HMMRO75330 724 aa21.22■□□□□ 0.99
CLK3-227ENST00000570296 ZFYP08048 801 aaPredicted RBP21.22■□□□□ 0.99
CLK3-227ENST00000570296 GPCPD1Q9NPB8 672 aa21.22■□□□□ 0.99
CLK3-227ENST00000570296 MRVI1Q9Y6F6 885 aa21.22■□□□□ 0.99
CLK3-227ENST00000570296 FRMPD2Q68DX3 1309 aaPredicted RBP21.22■□□□□ 0.99
CLK3-227ENST00000570296 M0R2C6 588 aa21.21■□□□□ 0.99
CLK3-227ENST00000570296 EIF3JO75822 258 aaKnown RBP21.21■□□□□ 0.99
CLK3-227ENST00000570296 ITGB1P05556 798 aa21.21■□□□□ 0.99
CLK3-227ENST00000570296 RMDN1Q96DB5 314 aa21.21■□□□□ 0.99
CLK3-227ENST00000570296 NAPBQ9H115 298 aa21.21■□□□□ 0.99
CLK3-227ENST00000570296 CHD6Q8TD26 2715 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 TREHO43280 583 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 MTMR3Q13615 1198 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 FAM26DQ5JW98 314 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 ASTLQ6HA08 431 aaPredicted RBP21.2■□□□□ 0.98
CLK3-227ENST00000570296 RBM23Q86U06 439 aaKnown RBP21.2■□□□□ 0.98
CLK3-227ENST00000570296 KREMEN2Q8NCW0 462 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 SYTL5Q8TDW5 730 aaPredicted RBP21.2■□□□□ 0.98
CLK3-227ENST00000570296 TAAR1Q96RJ0 339 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 RMDN3Q96TC7 470 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 C16orf70Q9BSU1 422 aa21.2■□□□□ 0.98
CLK3-227ENST00000570296 DGKIO75912 1065 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 SMIM10L2AP0DMW4 78 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 SMIM10L2BP0DMW5 78 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 MYSM1Q5VVJ2 828 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 ATP8B4Q8TF62 1192 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 POF1BQ8WVV4 589 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 SPATA33Q96N06 139 aa21.19■□□□□ 0.98
CLK3-227ENST00000570296 ZFHX4Q86UP3 3567 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 TOP1P11387 765 aaKnown RBP21.18■□□□□ 0.98
CLK3-227ENST00000570296 HSDL1Q3SXM5 330 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 USH1GQ495M9 461 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 KCNV1Q6PIU1 500 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 NEK1Q96PY6 1258 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 TLE6Q9H808 572 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 COL20A1Q9P218 1284 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 SORCS3Q9UPU3 1222 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 MRPL42Q9Y6G3 142 aaKnown RBP21.18■□□□□ 0.98
CLK3-227ENST00000570296 FRYLO94915 3013 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 PLXNA4Q9HCM2 1894 aa21.18■□□□□ 0.98
CLK3-227ENST00000570296 H3BRB1 525 aa21.17■□□□□ 0.98
CLK3-227ENST00000570296 RANBP6O60518 1105 aaKnown RBP21.17■□□□□ 0.98
CLK3-227ENST00000570296 PDHBP11177 359 aa21.17■□□□□ 0.98
CLK3-227ENST00000570296 GNAT1P11488 350 aa21.17■□□□□ 0.98
CLK3-227ENST00000570296 CLCN5P51795 746 aa21.17■□□□□ 0.98
CLK3-227ENST00000570296 CELF3Q5SZQ8 465 aaKnown RBP21.17■□□□□ 0.98
CLK3-227ENST00000570296 CMTR2Q8IYT2 770 aaKnown RBP21.17■□□□□ 0.98
CLK3-227ENST00000570296 KLHL23Q8NBE8 558 aa21.17■□□□□ 0.98
CLK3-227ENST00000570296 CDCA3Q99618 268 aaPredicted RBP21.17■□□□□ 0.98
CLK3-227ENST00000570296 RNPEPQ9H4A4 650 aa21.17■□□□□ 0.98
CLK3-227ENST00000570296 TUT1Q9H6E5 874 aaKnown RBP21.17■□□□□ 0.98
CLK3-227ENST00000570296 BAHCC1Q9P281 2608 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 ENPP3O14638 875 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 ZNF543Q08ER8 600 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 PUM1Q14671 1186 aaKnown RBP eCLIP21.16■□□□□ 0.98
CLK3-227ENST00000570296 ARHGEF16Q5VV41 709 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 TBC1D5Q92609 795 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 CNTNAP3BQ96NU0 1288 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms