RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 WDR19Q8NEZ3 1342 aa11.86□□□□□ -0.51
CLK3-226ENST00000569406 PRC1O43663 620 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 USO1O60763 962 aaKnown RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 SP100P23497 879 aaPredicted RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 MRPS25P82663 173 aaKnown RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 NTRK3Q16288 839 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 FXNQ16595 210 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 ADGRA1Q86SQ6 560 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 ZNF653Q96CK0 615 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CEP295NLQ96MC4 621 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 LOC102724428A0A0B4J2F2 783 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 GOLGA6L10A0A0M3HER8 536 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 GNAT2P19087 354 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 MDH1P40925 334 aaKnown RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 GUCY2FP51841 1108 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 SIK1P57059 783 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 FAM133BQ5BKY9 247 aaKnown RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 CPLX4Q7Z7G2 160 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 ZNF384Q8TF68 577 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CPLX3Q8WVH0 158 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 HPS3Q969F9 1004 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CROTQ9UKG9 612 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CEP131Q9UPN4 1083 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CCND1P24385 295 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 YY1P25490 414 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CDC27P30260 824 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 HOXA10P31260 410 aaPredicted RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 SERPINB4P48594 390 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 PSMC1P62191 440 aaKnown RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 QPCTQ16769 361 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 CCNI2Q6ZMN8 369 aaPredicted RBP11.85□□□□□ -0.51
CLK3-226ENST00000569406 VSTM4Q8IW00 320 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 AIFM3Q96NN9 605 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 GGA2Q9UJY4 613 aa11.85□□□□□ -0.51
CLK3-226ENST00000569406 GRAMD4Q6IC98 578 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 EXOC3L1Q86VI1 746 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 AMIGO3Q86WK7 504 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 PEX5LQ8IYB4 626 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 WDR60Q8WVS4 1066 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 NLRP3Q96P20 1036 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 CARD9Q9H257 536 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 GMEB1Q9Y692 573 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 ENC1O14682 589 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 PENKP01210 267 aaPredicted RBP11.84□□□□□ -0.51
CLK3-226ENST00000569406 VIMP08670 466 aaKnown RBP11.84□□□□□ -0.51
CLK3-226ENST00000569406 PUM3Q15397 648 aaKnown RBP11.84□□□□□ -0.51
CLK3-226ENST00000569406 ALS2CLQ60I27 953 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 PACS1Q6VY07 963 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 SMIM5Q71RC9 77 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 LPIN2Q92539 896 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 MRGBPQ9NV56 204 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 CCDC87Q9NVE4 849 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 GMNCA6NCL1 334 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 SREK1Q8WXA9 508 aaKnown RBP11.84□□□□□ -0.51
CLK3-226ENST00000569406 HIC2Q96JB3 615 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 GBP5Q96PP8 586 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 ZMYM6O95789 1325 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 MROH5Q6ZUA9 1318 aa11.84□□□□□ -0.51
CLK3-226ENST00000569406 SH2B2O14492 632 aaPredicted RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 RANBP6O60518 1105 aaKnown RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 SARSP49591 514 aaKnown RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 PSMD7P51665 324 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 GUCY2DQ02846 1103 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 DIXDC1Q155Q3 683 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 GKAP1Q5VSY0 366 aaPredicted RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 HDAC7Q8WUI4 952 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SIKE1Q9BRV8 207 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 TRPV5Q9NQA5 729 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 PFDN4Q9NQP4 134 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 CNNM1Q9NRU3 951 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 EFR3BQ9Y2G0 817 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 TMA7Q9Y2S6 64 aaKnown RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 DAAM1Q9Y4D1 1078 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 CLIC4Q9Y696 253 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 DLEC1Q9Y238 1755 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 BAZ2AQ9UIF9 1905 aaKnown RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 GSG1L2A8MUP6 293 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SRGAP2O75044 1071 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 CCDC166P0CW27 439 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 CCNFP41002 786 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 ARPC4P59998 168 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 KDM7AQ6ZMT4 941 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SPATA5Q8NB90 893 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SHISA4Q96DD7 197 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLK3-226ENST00000569406 RETREG1Q9H6L5 497 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 ARHGEF38Q9NXL2 777 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 MTMR7Q9Y216 660 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 ITIH6Q6UXX5 1313 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SBF2Q86WG5 1849 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 TROVE2P10155 538 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLK3-226ENST00000569406 RIPK1Q13546 671 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 ALX1Q15699 326 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 DDB1Q16531 1140 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 LONRF3Q496Y0 759 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SH2D4BQ5SQS7 431 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 SOGA3Q5TF21 947 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 FMR1NBQ8N0W7 255 aaPredicted RBP11.83□□□□□ -0.52
CLK3-226ENST00000569406 MMS19Q96T76 1030 aa11.83□□□□□ -0.52
CLK3-226ENST00000569406 NDST4Q9H3R1 872 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms