RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 NBPF20Q3BBV1 942 aa15.31■□□□□ 0.04
CLK3-218ENST00000566926 FAM47CQ5HY64 1035 aa15.31■□□□□ 0.04
CLK3-218ENST00000566926 METTL7BQ6UX53 244 aa15.31■□□□□ 0.04
CLK3-218ENST00000566926 ANO3Q9BYT9 981 aa15.31■□□□□ 0.04
CLK3-218ENST00000566926 UBIAD1Q9Y5Z9 338 aa15.31■□□□□ 0.04
CLK3-218ENST00000566926 HOXD8P13378 290 aaPredicted RBP15.3■□□□□ 0.04
CLK3-218ENST00000566926 FPGSQ05932 587 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 MTMR1Q13613 665 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 HSDL1Q3SXM5 330 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 MFSD5Q6N075 450 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 CCDC83Q8IWF9 413 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 REXO1Q8N1G1 1221 aaKnown RBP15.3■□□□□ 0.04
CLK3-218ENST00000566926 TMEM199Q8N511 208 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 LARP6Q9BRS8 491 aaKnown RBP15.3■□□□□ 0.04
CLK3-218ENST00000566926 JADE2Q9NQC1 790 aa15.3■□□□□ 0.04
CLK3-218ENST00000566926 B4GALT4O60513 344 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 LARGE1O95461 756 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 XBP1P17861 261 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 ZNF76P36508 570 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 SREBF1P36956 1147 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 PSEN2P49810 448 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 NLRP5P59047 1200 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 CHMP4BP1P59074 171 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 SEMA3FQ13275 785 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 PPIGQ13427 754 aaKnown RBP eCLIP15.29■□□□□ 0.041e-6■■■□□ 18.5
CLK3-218ENST00000566926 JAKMIP3Q5VZ66 844 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 CYFIP1Q7L576 1253 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 SESTD1Q86VW0 696 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 SPRYD3Q8NCJ5 442 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 MXRA8Q9BRK3 442 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 TRPV6Q9H1D0 765 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 HIPK3Q9H422 1215 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 NOD1Q9Y239 953 aa15.29■□□□□ 0.04
CLK3-218ENST00000566926 MYH9P35579 1960 aaKnown RBP15.29■□□□□ 0.04
CLK3-218ENST00000566926 SORBS3O60504 671 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 F2P00734 622 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 ITGB5P18084 799 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 SCRN1Q12765 414 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 LRIT3Q3SXY7 679 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 CEP55Q53EZ4 464 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 GALNT17Q6IS24 598 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 C7orf31Q8N865 590 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 KAT2BQ92831 832 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 VPS54Q9P1Q0 977 aa15.28■□□□□ 0.04
CLK3-218ENST00000566926 STK36Q9NRP7 1315 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 HAS3O00219 553 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 KCNA2P16389 499 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 ITGB8P26012 769 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 FXR1P51114 621 aaKnown RBP eCLIP15.27■□□□□ 0.04
CLK3-218ENST00000566926 ARHGAP4P98171 946 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 MFSD10Q14728 455 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 KIAA0753Q2KHM9 967 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 NIPA1Q7RTP0 329 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 CCDC155Q8N6L0 562 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 NECAB1Q8N987 351 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 WASF1Q92558 559 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 PGBD1Q96JS3 809 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 ALG1Q9BT22 464 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 PPP1R12CQ9BZL4 782 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 TRMT13Q9NUP7 481 aaKnown RBP15.27■□□□□ 0.04
CLK3-218ENST00000566926 TMEM260Q9NX78 707 aa15.27■□□□□ 0.04
CLK3-218ENST00000566926 ZNF215Q9UL58 517 aaPredicted RBP15.27■□□□□ 0.04
CLK3-218ENST00000566926 RANBP2P49792 3224 aaKnown RBP15.26■□□□□ 0.03
CLK3-218ENST00000566926 H3BRB1 525 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 MEIS1O00470 390 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 PPFIA3O75145 1194 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 CYP3A4P08684 503 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 ZNF286BP0CG31 522 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 ST3GAL1Q11201 340 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 BFSP2Q13515 415 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 PTGISQ16647 500 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 RETREG2Q8NC44 543 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 SEPT1Q8WYJ6 367 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 GPR20Q99678 358 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 SDF4Q9BRK5 362 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 C16orf70Q9BSU1 422 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 NOC4LQ9BVI4 516 aaKnown RBP15.26■□□□□ 0.03
CLK3-218ENST00000566926 TUT1Q9H6E5 874 aaKnown RBP15.26■□□□□ 0.03
CLK3-218ENST00000566926 KCNH7Q9NS40 1196 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 FOXD4L1Q9NU39 408 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 GTF2IRD1Q9UHL9 959 aa15.26■□□□□ 0.03
CLK3-218ENST00000566926 WDR81Q562E7 1941 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 NFASCO94856 1347 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 ATP9AO75110 1047 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 LGALS2P05162 132 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 GJB2P29033 226 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 CYP2C18P33260 490 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 RPUSD2Q8IZ73 545 aaKnown RBP15.25■□□□□ 0.03
CLK3-218ENST00000566926 FAM184AQ8NB25 1140 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 CAGE1Q8TC20 777 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 HDAC6Q9UBN7 1215 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 PCDHA4Q9UN74 947 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 TANC1Q9C0D5 1861 aa15.25■□□□□ 0.03
CLK3-218ENST00000566926 SCN5AQ14524 2016 aa15.24■□□□□ 0.03
CLK3-218ENST00000566926 PITPNM1O00562 1244 aa15.24■□□□□ 0.03
CLK3-218ENST00000566926 GNAT1P11488 350 aa15.24■□□□□ 0.03
CLK3-218ENST00000566926 CYP2C9P11712 490 aa15.24■□□□□ 0.03
CLK3-218ENST00000566926 CSF2RAP15509 400 aa15.24■□□□□ 0.03
CLK3-218ENST00000566926 SETQ01105 290 aaPredicted RBP15.24■□□□□ 0.03
CLK3-218ENST00000566926 SP4Q02446 784 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms