RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MAGEF1Q9HAY2 307 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 SBF2Q86WG5 1849 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 NAV1Q8NEY1 1877 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 USO1O60763 962 aaKnown RBP14.91□□□□□ -0.02
CLK3-215ENST00000564353 TACC1O75410 805 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 MED24O75448 989 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 EEF2P13639 858 aaKnown RBP14.91□□□□□ -0.02
CLK3-215ENST00000564353 TUBB2AQ13885 445 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 CCDC181Q5TID7 509 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 GUF1Q8N442 669 aaKnown RBP14.91□□□□□ -0.02
CLK3-215ENST00000564353 TUBB2BQ9BVA1 445 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 RIC8AQ9NPQ8 531 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 TRPC5Q9UL62 973 aaPredicted RBP14.91□□□□□ -0.02
CLK3-215ENST00000564353 SNX12Q9UMY4 172 aa14.91□□□□□ -0.02
CLK3-215ENST00000564353 DDTLA6NHG4 134 aaPredicted RBP14.9□□□□□ -0.02
CLK3-215ENST00000564353 TRIM66O15016 1216 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 ZBTB5O15062 677 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 TLR2O60603 784 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 PLA2G4BP0C869 781 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 UBXN2AP68543 259 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 SND1Q7KZF4 910 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLK3-215ENST00000564353 TRMT1LQ7Z2T5 733 aaKnown RBP14.9□□□□□ -0.02
CLK3-215ENST00000564353 SLF2Q8IX21 1173 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 RETREG2Q8NC44 543 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 TSG101Q99816 390 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 STK17AQ9UEE5 414 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 ADAMTS1Q9UHI8 967 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 HPCAL4Q9UM19 191 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 BCS1LQ9Y276 419 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 BBOX1O75936 387 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 SYF2O95926 243 aaKnown RBP14.9□□□□□ -0.02
CLK3-215ENST00000564353 PSEN1P49768 467 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 SEPT2Q15019 361 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 TBC1D22AQ8WUA7 517 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 TBC1D5Q92609 795 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 OSBPL9Q96SU4 736 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 COL4A3BPQ9Y5P4 624 aa14.9□□□□□ -0.02
CLK3-215ENST00000564353 RSPH10B2B2RC85 870 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 RSPH10BP0C881 870 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 EPS15P42566 896 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 FAM83BQ5T0W9 1011 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 EP400NLQ6ZTU2 488 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 PROM2Q8N271 834 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 EHBP1Q8NDI1 1231 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 ZNF622Q969S3 477 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLK3-215ENST00000564353 THSD7AQ9UPZ6 1657 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 PVALEFA0A1B0GWK0 134 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 POLRMTO00411 1230 aaKnown RBP14.89□□□□□ -0.03
CLK3-215ENST00000564353 NOL4O94818 638 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 MRPL12P52815 198 aaKnown RBP14.89□□□□□ -0.03
CLK3-215ENST00000564353 KCNA1Q09470 495 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 DCAF17Q5H9S7 520 aaPredicted RBP14.89□□□□□ -0.03
CLK3-215ENST00000564353 APOBEC3HQ6NTF7 200 aaKnown RBP14.89□□□□□ -0.03
CLK3-215ENST00000564353 WDR93Q6P2C0 686 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 KSR1Q8IVT5 923 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 SPATA4Q8NEY3 305 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 GBP3Q9H0R5 595 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 EHD4Q9H223 541 aa14.89□□□□□ -0.03
CLK3-215ENST00000564353 RBM12Q9NTZ6 932 aaKnown RBP14.89□□□□□ -0.03
CLK3-215ENST00000564353 ESYT2A0FGR8 921 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 CHMP2AO43633 222 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 PRPF6O94906 941 aaKnown RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 SLC20A2Q08357 652 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 TRADDQ15628 312 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 CDC37Q16543 378 aaPredicted RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 TMEM119Q4V9L6 283 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 TCERG1LQ5VWI1 586 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 PDXDC1Q6P996 788 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 SCFD1Q8WVM8 642 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 EXOC4Q96A65 974 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 FAM163AQ96GL9 167 aaPredicted RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.88□□□□□ -0.03
CLK3-215ENST00000564353 CLGNO14967 610 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 ZBTB39O15060 712 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 CLIC2O15247 247 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 SNHG28P0DPA3 235 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 FKBP3Q00688 224 aaKnown RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 CKAP4Q07065 602 aaKnown RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 ADAM9Q13443 819 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 HGSNATQ68CP4 663 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 TRIM58Q8NG06 486 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 IFT81Q8WYA0 676 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 EMILIN3Q9NT22 766 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 JRKLQ9Y4A0 524 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 IGKV6D-41A0A0C4DH26 115 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 PALMO75781 387 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 SLC9A1P19634 815 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 MMP14P50281 582 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 EHHADHQ08426 723 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 SLFN13Q68D06 897 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 CCNI2Q6ZMN8 369 aaPredicted RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 C10orf67Q8IYJ2 551 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 PURBQ96QR8 312 aaKnown RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 ANO3Q9BYT9 981 aa14.88□□□□□ -0.03
CLK3-215ENST00000564353 BMP2KQ9NSY1 1161 aaPredicted RBP14.88□□□□□ -0.03
CLK3-215ENST00000564353 MAST2Q6P0Q8 1798 aa14.87□□□□□ -0.03
CLK3-215ENST00000564353 A0A087X0T9 212 aa14.87□□□□□ -0.03
CLK3-215ENST00000564353 A0A1W2PQJ5 194 aa14.87□□□□□ -0.03
CLK3-215ENST00000564353 HLA-DOAP06340 250 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms