RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 RIT2Q99578 217 aa20.2■□□□□ 0.82
COMMD4-208ENST00000563220 HSD17B14Q9BPX1 270 aa20.2■□□□□ 0.82
COMMD4-208ENST00000563220 POLR3CQ9BUI4 534 aaPredicted RBP20.2■□□□□ 0.82
COMMD4-208ENST00000563220 UNC45AQ9H3U1 944 aa20.2■□□□□ 0.82
COMMD4-208ENST00000563220 AGO4Q9HCK5 861 aaKnown RBP20.2■□□□□ 0.82
COMMD4-208ENST00000563220 FANCLQ9NW38 375 aa20.2■□□□□ 0.82
COMMD4-208ENST00000563220 PKD2L1Q9P0L9 805 aa20.2■□□□□ 0.82
COMMD4-208ENST00000563220 DHX15O43143 795 aaKnown RBP20.19■□□□□ 0.82
COMMD4-208ENST00000563220 PLA2G4BP0C869 781 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 OSBPP22059 807 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 CYP4A11Q02928 519 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 PABPC4Q13310 644 aaKnown RBP eCLIP20.19■□□□□ 0.821e-6■■□□□ 13.1
COMMD4-208ENST00000563220 MTMR1Q13613 665 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 Q3C1V9 767 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 C2orf69Q8N8R5 385 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 NSUN6Q8TEA1 469 aaKnown RBP20.19■□□□□ 0.82
COMMD4-208ENST00000563220 MS4A4AQ96JQ5 239 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 TEKT3Q9BXF9 490 aa20.19■□□□□ 0.82
COMMD4-208ENST00000563220 MOV10L1Q9BXT6 1211 aaKnown RBP20.19■□□□□ 0.82
COMMD4-208ENST00000563220 MKRN3Q13064 507 aaKnown RBP20.18■□□□□ 0.82
COMMD4-208ENST00000563220 ITGB3BPQ13352 177 aaPredicted RBP20.18■□□□□ 0.82
COMMD4-208ENST00000563220 CST9Q5W186 159 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 XRRA1Q6P2D8 792 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 DYMQ7RTS9 669 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 DDX12PQ92771 950 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 SLITRK3O94933 977 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 ATP1A3P13637 1013 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 CCND2P30279 289 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 PRCPP42785 496 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 STX17P56962 302 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 TPM4P67936 248 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 SEMA3FQ13275 785 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 CNNM4Q6P4Q7 775 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 NCAPG2Q86XI2 1143 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 ANKRD35Q8N283 1001 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 GIMAP8Q8ND71 665 aaPredicted RBP20.18■□□□□ 0.82
COMMD4-208ENST00000563220 FBXO40Q9UH90 709 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 MAPK8IP1Q9UQF2 711 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 NFE2L3Q9Y4A8 694 aa20.18■□□□□ 0.82
COMMD4-208ENST00000563220 DDX39AO00148 427 aaKnown RBP20.17■□□□□ 0.82
COMMD4-208ENST00000563220 ATP9AO75110 1047 aa20.17■□□□□ 0.82
COMMD4-208ENST00000563220 ITGBL1O95965 494 aaPredicted RBP20.17■□□□□ 0.82
COMMD4-208ENST00000563220 SSBP05455 408 aaKnown RBP eCLIP20.17■□□□□ 0.82
COMMD4-208ENST00000563220 CNTN2Q02246 1040 aa20.17■□□□□ 0.82
COMMD4-208ENST00000563220 PDE4DQ08499 809 aa20.17■□□□□ 0.82
COMMD4-208ENST00000563220 CTTNQ14247 550 aaKnown RBP20.17■□□□□ 0.82
COMMD4-208ENST00000563220 DNAJC19Q96DA6 116 aa20.17■□□□□ 0.82
COMMD4-208ENST00000563220 DYDC2Q96IM9 177 aa20.17■□□□□ 0.82
COMMD4-208ENST00000563220 LRRC27Q9C0I9 530 aa20.17■□□□□ 0.82
COMMD4-208ENST00000563220 A0A0G2JMZ2 1700 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 RBBP6Q7Z6E9 1792 aaKnown RBP20.16■□□□□ 0.82
COMMD4-208ENST00000563220 PVALEFA0A1B0GWK0 134 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 TESPA1A2RU30 521 aaPredicted RBP20.16■□□□□ 0.82
COMMD4-208ENST00000563220 COBLO75128 1261 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 ERCC3P19447 782 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 SLC12A3P55017 1021 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 STK4Q13043 487 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 HS1BP3Q53T59 392 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 UNC13DQ70J99 1090 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 EXOC1Q9NV70 894 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 DNM3Q9UQ16 869 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 ASTN1O14525 1302 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 RGS20O76081 388 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 CYP2C8P10632 490 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 FCER1AP12319 257 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 EPHA7Q15375 998 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 ADSSL1Q8N142 457 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 HPS3Q969F9 1004 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 INPP4AQ96PE3 977 aaPredicted RBP20.16■□□□□ 0.82
COMMD4-208ENST00000563220 TUFT1Q9NNX1 390 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 CTNND2Q9UQB3 1225 aa20.16■□□□□ 0.82
COMMD4-208ENST00000563220 CETPP11597 493 aa20.15■□□□□ 0.82
COMMD4-208ENST00000563220 CYP11B2P19099 503 aa20.15■□□□□ 0.82
COMMD4-208ENST00000563220 GTF2A2P52657 109 aa20.15■□□□□ 0.82
COMMD4-208ENST00000563220 ARSHQ5FYA8 562 aa20.15■□□□□ 0.82
COMMD4-208ENST00000563220 TPH2Q8IWU9 490 aa20.15■□□□□ 0.82
COMMD4-208ENST00000563220 BRI3BPQ8WY22 251 aa20.15■□□□□ 0.82
COMMD4-208ENST00000563220 CCDC47Q96A33 483 aaKnown RBP20.15■□□□□ 0.82
COMMD4-208ENST00000563220 SAMSN1Q9NSI8 373 aaKnown RBP20.15■□□□□ 0.82
COMMD4-208ENST00000563220 CCL15-CCL14A0A0B4J2E2 113 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 BTBD19C9JJ37 291 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 SLC25A27O95847 323 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 ZNF18P17022 549 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 FANCCQ00597 558 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 FSTL1Q12841 308 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 CCL15Q16663 113 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 HSP90AA4PQ58FG1 418 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 SPATA1Q5VX52 437 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 SPRYD7Q5W111 196 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 GPBP1Q86WP2 473 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 SYT2Q8N9I0 419 aaPredicted RBP20.14■□□□□ 0.81
COMMD4-208ENST00000563220 SPC24Q8NBT2 197 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 NELFBQ8WX92 580 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 MRFAP1L1Q96HT8 127 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 TBC1D22BQ9NU19 505 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 WRAP73Q9P2S5 460 aaPredicted RBP20.14■□□□□ 0.81
COMMD4-208ENST00000563220 PFASO15067 1338 aa20.14■□□□□ 0.81
COMMD4-208ENST00000563220 NPHP3-ACAD11A0A0J9YXS1 232 aa20.13■□□□□ 0.81
COMMD4-208ENST00000563220 IDEP14735 1019 aa20.13■□□□□ 0.81
COMMD4-208ENST00000563220 EHHADHQ08426 723 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms