RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 KCNB2Q92953 911 aa11.83□□□□□ -0.52
CLK3-205ENST00000561673 NKX2-4Q9H2Z4 354 aa11.83□□□□□ -0.52
CLK3-205ENST00000561673 FAM217BQ9NTX9 383 aaPredicted RBP11.83□□□□□ -0.52
CLK3-205ENST00000561673 RBM28Q9NW13 759 aaKnown RBP11.83□□□□□ -0.52
CLK3-205ENST00000561673 TELO2Q9Y4R8 837 aa11.83□□□□□ -0.52
CLK3-205ENST00000561673 KLF18A0A0U1RQI7 1052 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 H3BRB1 525 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 RBAK-RBAKDNI3L0D1 243 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 NOP56O00567 594 aaKnown RBP11.82□□□□□ -0.52
CLK3-205ENST00000561673 LGALS2P05162 132 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 HMGB1P09429 215 aaKnown RBP11.82□□□□□ -0.52
CLK3-205ENST00000561673 ACTN1P12814 892 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 SELPP16109 830 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 RBL2Q08999 1139 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 PTK7Q13308 1070 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 RTN1Q16799 776 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 TRIM71Q2Q1W2 868 aaKnown RBP11.82□□□□□ -0.52
CLK3-205ENST00000561673 WWC2Q6AWC2 1192 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 LRRC8DQ7L1W4 858 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 NLRX1Q86UT6 975 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 WNT8BQ93098 351 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 GPR20Q99678 358 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 SENP7Q9BQF6 1050 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 USP26Q9BXU7 913 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 TUT1Q9H6E5 874 aaKnown RBP11.82□□□□□ -0.52
CLK3-205ENST00000561673 PCDHA6Q9UN73 950 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 PCDHA8Q9Y5H6 950 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 V9GY48 417 aaPredicted RBP11.82□□□□□ -0.52
CLK3-205ENST00000561673 CNTNAP5Q8WYK1 1306 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 REV3LO60673 3130 aa11.82□□□□□ -0.52
CLK3-205ENST00000561673 SPDYE3A6NKU9 549 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 DLL1O00548 723 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 NBNO60934 754 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 ATP9AO75110 1047 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 ITGB5P18084 799 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 CDC27P30260 824 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 HSPA4P34932 840 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 ZNF618Q5T7W0 954 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 TYW1BQ6NUM6 668 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 TRAF7Q6Q0C0 670 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLK3-205ENST00000561673 PRDM12Q9H4Q4 367 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 SLC28A3Q9HAS3 691 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 PCDHA11Q9Y5I1 949 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 SNX14Q9Y5W7 946 aa11.81□□□□□ -0.52
CLK3-205ENST00000561673 C17orf102A2RUQ5 167 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 GOLGA8AA7E2F4 631 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 GOLGA8BA8MQT2 603 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 PARNO95453 639 aaKnown RBP11.8□□□□□ -0.52
CLK3-205ENST00000561673 CXCL10P02778 98 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 SMIM10L2AP0DMW4 78 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 SMIM10L2BP0DMW5 78 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 KCNA2P16389 499 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 HOXC8P31273 242 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 ADD1P35611 737 aaKnown RBP11.8□□□□□ -0.52
CLK3-205ENST00000561673 FGD1P98174 961 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 SP4Q02446 784 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 APOBRQ0VD83 1088 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 Q6ZUG5 572 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 SERINC5Q86VE9 423 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 TRIM50Q86XT4 487 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 GIMAP8Q8ND71 665 aaPredicted RBP11.8□□□□□ -0.52
CLK3-205ENST00000561673 PHOSPHO2Q8TCD6 241 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 ATP6V0A1Q93050 837 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 GPRASP2Q96D09 838 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 CDHR1Q96JP9 859 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 JAKMIP1Q96N16 626 aaKnown RBP11.8□□□□□ -0.52
CLK3-205ENST00000561673 RNPEPQ9H4A4 650 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 RIC8AQ9NPQ8 531 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 NAP1L2Q9ULW6 460 aaPredicted RBP11.8□□□□□ -0.52
CLK3-205ENST00000561673 UBIAD1Q9Y5Z9 338 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 TRANK1O15050 2925 aa11.8□□□□□ -0.52
CLK3-205ENST00000561673 STXBP3O00186 592 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 TREHO43280 583 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 BAIAP3O94812 1187 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 THPOP40225 353 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 METAP2P50579 478 aaKnown RBP eCLIP11.79□□□□□ -0.52
CLK3-205ENST00000561673 RCAN1P53805 252 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 NAPAP54920 295 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 MTMR1Q13613 665 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 ADGRE1Q14246 886 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 MBTPS1Q14703 1052 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 TCTN1Q2MV58 587 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 UTP14CQ5TAP6 766 aaKnown RBP11.79□□□□□ -0.52
CLK3-205ENST00000561673 PPP2R2DQ66LE6 453 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 HERC6Q8IVU3 1022 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 CYP2W1Q8TAV3 490 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 SLC9A7Q96T83 725 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 GAS2L1Q99501 681 aaPredicted RBP11.79□□□□□ -0.52
CLK3-205ENST00000561673 JADE2Q9NQC1 790 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 SETD4Q9NVD3 440 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 BARHL2Q9NY43 387 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 MYH7BA7E2Y1 1941 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 SCN5AQ14524 2016 aa11.79□□□□□ -0.52
CLK3-205ENST00000561673 GSTTP1A0A1W2PQM5 241 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 SMCO2A6NFE2 343 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 MAFGO15525 162 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 REC8O95072 547 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 CA3P07451 260 aa11.78□□□□□ -0.52
CLK3-205ENST00000561673 RPS6KB1P23443 525 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms