RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CCER2I3L3R5 266 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 PPM1BO75688 479 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 RANGAP1P46060 587 aaPredicted RBP3.45□□□□□ -1.86
SPG11-223ENST00000560858 SLC6A11P48066 632 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 AMPD2Q01433 879 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 TCTN3Q6NUS6 607 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 ADCY4Q8NFM4 1077 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 NEU4Q8WWR8 484 aaPredicted RBP3.45□□□□□ -1.86
SPG11-223ENST00000560858 EDAQ92838 391 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 LMF1Q96S06 567 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 MCMBPQ9BTE3 642 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 NT5C1AQ9BXI3 368 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 GBP3Q9H0R5 595 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 MEGF9Q9H1U4 602 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 ZNF214Q9UL59 606 aaPredicted RBP3.45□□□□□ -1.86
SPG11-223ENST00000560858 MTUS2Q5JR59 1369 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 MBD5Q9P267 1494 aa3.45□□□□□ -1.86
SPG11-223ENST00000560858 EIF4G3O43432 1585 aaKnown RBP3.45□□□□□ -1.86
SPG11-223ENST00000560858 PDS5BQ9NTI5 1447 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 CDK13Q14004 1512 aaKnown RBP3.44□□□□□ -1.86
SPG11-223ENST00000560858 MRC2Q9UBG0 1479 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 FOXS1O43638 330 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 COMTP21964 271 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 MROH9Q5TGP6 573 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 HEATR6Q6AI08 1181 aaKnown RBP3.44□□□□□ -1.86
SPG11-223ENST00000560858 TRMT10BQ6PF06 316 aaKnown RBP3.44□□□□□ -1.86
SPG11-223ENST00000560858 UNC5AQ6ZN44 842 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 EXTL1Q92935 676 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 TOE1Q96GM8 510 aaKnown RBP3.44□□□□□ -1.86
SPG11-223ENST00000560858 ZSWIM3Q96MP5 696 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 GNRHR2Q96P88 292 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 TMEM209Q96SK2 561 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 BTG4Q9NY30 223 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 ADAMTS1Q9UHI8 967 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 GGT7Q9UJ14 662 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 ADAM29Q9UKF5 820 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 ZNRF3Q9ULT6 936 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 KDM5DQ9BY66 1539 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 CNTLNQ9NXG0 1405 aa3.44□□□□□ -1.86
SPG11-223ENST00000560858 ADGRL2O95490 1459 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 RPRD2Q5VT52 1461 aaKnown RBP3.43□□□□□ -1.86
SPG11-223ENST00000560858 ROCK1Q13464 1354 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 TONSLQ96HA7 1378 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 CBFA2T2O43439 604 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 THBDP07204 575 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 CSRP2Q16527 193 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 HS2ST1Q7LGA3 356 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 C1orf210Q8IVY1 113 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 TEX2Q8IWB9 1127 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 SCUBE1Q8IWY4 988 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 PLEKHG4BQ96PX9 1271 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 MMP19Q99542 508 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 HAUS7Q99871 368 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 DISP1Q96F81 1524 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 NCOA1Q15788 1441 aa3.43□□□□□ -1.86
SPG11-223ENST00000560858 KDM5CP41229 1560 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 CEP170Q5SW79 1584 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 NUP153P49790 1475 aaKnown RBP3.42□□□□□ -1.86
SPG11-223ENST00000560858 SHANK2Q9UPX8 1470 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 BCORL1Q5H9F3 1711 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 CNOT4O95628 575 aaKnown RBP3.42□□□□□ -1.86
SPG11-223ENST00000560858 ADH4P08319 380 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 GUCY2CP25092 1073 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 GRB10Q13322 594 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 FAM50AQ14320 339 aaKnown RBP3.42□□□□□ -1.86
SPG11-223ENST00000560858 KRTAP15-1Q3LI76 137 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 GNPTABQ3T906 1256 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 AGBL4Q5VU57 503 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 FBXW10Q5XX13 1052 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 RALYLQ86SE5 291 aaKnown RBP3.42□□□□□ -1.86
SPG11-223ENST00000560858 TAX1BP1Q86VP1 789 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 RIOX2Q8IUF8 465 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 IFNL2Q8IZJ0 200 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 ARHGEF39Q8N4T4 335 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 ZCCHC14Q8WYQ9 949 aaKnown RBP3.42□□□□□ -1.86
SPG11-223ENST00000560858 DPF3Q92784 378 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 RCC1LQ96I51 464 aaKnown RBP3.42□□□□□ -1.86
SPG11-223ENST00000560858 LRRC37BQ96QE4 947 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 FERD3LQ96RJ6 166 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 DLL4Q9NR61 685 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 CLEC1BQ9P126 229 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 DAPK1P53355 1430 aa3.42□□□□□ -1.86
SPG11-223ENST00000560858 CAMSAP2Q08AD1 1489 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 IFT140Q96RY7 1462 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 PCSK5Q92824 1860 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 LAMC1P11047 1609 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 KIAA0586Q9BVV6 1533 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 ARHGEF12Q9NZN5 1544 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 HGSO14964 777 aaPredicted RBP3.41□□□□□ -1.86
SPG11-223ENST00000560858 PLSCR1O15162 318 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 PLS3P13797 630 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 MAKP20794 623 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 DGCR2P98153 550 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 CHRNA2Q15822 529 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 ZYXQ15942 572 aaKnown RBP3.41□□□□□ -1.86
SPG11-223ENST00000560858 IQCEQ6IPM2 695 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 MRGPRGQ86SM5 289 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 VOPP1Q96AW1 172 aa3.41□□□□□ -1.86
SPG11-223ENST00000560858 TRMT2BQ96GJ1 504 aaKnown RBP3.41□□□□□ -1.86
SPG11-223ENST00000560858 SIN3AQ96ST3 1273 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms