RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 KIAA0753Q2KHM9 967 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 SLC35G1Q2M3R5 365 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 STOX1Q6ZVD7 989 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 C7orf31Q8N865 590 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 NCOA7Q8NI08 942 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 UBAC1Q9BSL1 405 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 ALG1Q9BT22 464 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 MAP3K20Q9NYL2 800 aaKnown RBP16.13■□□□□ 0.17
LDLR-213ENST00000560502 RAPGEFL1Q9UHV5 662 aa16.13■□□□□ 0.17
LDLR-213ENST00000560502 ABHD14A-ACY1A0A1B0GW23 586 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 PALM3A6NDB9 673 aaPredicted RBP16.12■□□□□ 0.17
LDLR-213ENST00000560502 GJB5O95377 273 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
LDLR-213ENST00000560502 HIC1Q14526 733 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 IFIT1BQ5T764 474 aaKnown RBP16.12■□□□□ 0.17
LDLR-213ENST00000560502 MYSM1Q5VVJ2 828 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 RALYLQ86SE5 291 aaKnown RBP16.12■□□□□ 0.17
LDLR-213ENST00000560502 DHX37Q8IY37 1157 aaKnown RBP16.12■□□□□ 0.17
LDLR-213ENST00000560502 SAMD3Q8N6K7 520 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 IL31RAQ8NI17 732 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 MTA3Q9BTC8 594 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 AGXT2Q9BYV1 514 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 MAD2L2Q9UI95 211 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 DOCK5Q9H7D0 1870 aa16.12■□□□□ 0.17
LDLR-213ENST00000560502 KLRF2D3W0D1 207 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 RBAK-RBAKDNI3L0D1 243 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 ZBTB5O15062 677 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 EFCAB14O75071 495 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 PPFIA4O75335 1185 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 PDIA4P13667 645 aaKnown RBP16.11■□□□□ 0.17
LDLR-213ENST00000560502 ZNF200P98182 395 aaPredicted RBP16.11■□□□□ 0.17
LDLR-213ENST00000560502 PGM5Q15124 567 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 HSDL1Q3SXM5 330 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 CELF3Q5SZQ8 465 aaKnown RBP16.11■□□□□ 0.17
LDLR-213ENST00000560502 KCNV1Q6PIU1 500 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 CYB5R4Q7L1T6 521 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 VSIG10LQ86VR7 867 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 GDPD5Q8WTR4 605 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 SLKQ9H2G2 1235 aaPredicted RBP16.11■□□□□ 0.17
LDLR-213ENST00000560502 LMCD1Q9NZU5 365 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.11■□□□□ 0.17
LDLR-213ENST00000560502 TAF6LQ9Y6J9 622 aa16.11■□□□□ 0.17
LDLR-213ENST00000560502 MYCLP12524 364 aaPredicted RBP16.1■□□□□ 0.17
LDLR-213ENST00000560502 UBA1P22314 1058 aaKnown RBP16.1■□□□□ 0.17
LDLR-213ENST00000560502 HOXC8P31273 242 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 MCM5P33992 734 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 ERVK-21P61565 698 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 EXOSC10Q01780 885 aaKnown RBP16.1■□□□□ 0.17
LDLR-213ENST00000560502 SP2Q02086 613 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 GRM4Q14833 912 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 ZNF618Q5T7W0 954 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 HLA-CQ95604 372 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 RAD9AQ99638 391 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 C16orf70Q9BSU1 422 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 PCDHA1Q9Y5I3 950 aa16.1■□□□□ 0.17
LDLR-213ENST00000560502 COL4A6Q14031 1691 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 LINC01553A4QN01 128 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 LGR5O75473 907 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 GGPS1O95749 300 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 HOXA13P31271 388 aaPredicted RBP16.09■□□□□ 0.17
LDLR-213ENST00000560502 NUCB2P80303 420 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 SERINC5Q86VE9 423 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 MB21D2Q8IYB1 491 aaPredicted RBP16.09■□□□□ 0.17
LDLR-213ENST00000560502 GPKOWQ92917 476 aaPredicted RBP eCLIP16.09■□□□□ 0.178e-18■□□□□ 9.5
LDLR-213ENST00000560502 SPATA33Q96N06 139 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 ZBED2Q9BTP6 218 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 RIOX1Q9H6W3 641 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 SUGCTQ9HAC7 445 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 FRMPD4Q14CM0 1322 aa16.09■□□□□ 0.17
LDLR-213ENST00000560502 TGFB3P10600 412 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 CPA1P15085 419 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 FGD1P98174 961 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 TOB2Q14106 344 aaPredicted RBP16.08■□□□□ 0.16
LDLR-213ENST00000560502 IKBKEQ14164 716 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 TMEM87BQ96K49 555 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 TGS1Q96RS0 853 aaKnown RBP16.08■□□□□ 0.16
LDLR-213ENST00000560502 C1QTNF1Q9BXJ1 281 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 EMSYQ7Z589 1322 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 NLRC5Q86WI3 1866 aa16.08■□□□□ 0.16
LDLR-213ENST00000560502 CYTH3O43739 400 aa16.07■□□□□ 0.16
LDLR-213ENST00000560502 SORBS3O60504 671 aa16.07■□□□□ 0.16
LDLR-213ENST00000560502 CCND2P30279 289 aa16.07■□□□□ 0.16
LDLR-213ENST00000560502 EVCP57679 992 aa16.07■□□□□ 0.16
LDLR-213ENST00000560502 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.07■□□□□ 0.16
LDLR-213ENST00000560502 HOMER1Q86YM7 354 aa16.07■□□□□ 0.16
LDLR-213ENST00000560502 SP7Q8TDD2 431 aaPredicted RBP16.07■□□□□ 0.16
LDLR-213ENST00000560502 PIGSQ96S52 555 aa16.07■□□□□ 0.16
LDLR-213ENST00000560502 RALGAPA2Q2PPJ7 1873 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 GCOM1H8Y6P7 765 aaPredicted RBP16.06■□□□□ 0.16
LDLR-213ENST00000560502 POLR2MP0CAP2 368 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 HTRA4P83105 476 aaPredicted RBP16.06■□□□□ 0.16
LDLR-213ENST00000560502 TROAPQ12815 778 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 TRAF1Q13077 416 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 PLEKHG4Q58EX7 1191 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 Q6ZUG5 572 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 DBF4BQ8NFT6 615 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 ZFP91Q96JP5 570 aaPredicted RBP16.06■□□□□ 0.16
LDLR-213ENST00000560502 BCAS3Q9H6U6 928 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 SENP2Q9HC62 589 aa16.06■□□□□ 0.16
LDLR-213ENST00000560502 MTUS1Q9ULD2 1270 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms