RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 NMIQ13287 307 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 CLUL1Q15846 466 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 MYSM1Q5VVJ2 828 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 PNMA1Q8ND90 353 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 GPKOWQ92917 476 aaPredicted RBP eCLIP9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 TOP1MTQ969P6 601 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 EVI5LQ96CN4 794 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 SPATA33Q96N06 139 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 MAF1Q9H063 256 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 KCNH6Q9H252 994 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 MUTYHQ9UIF7 546 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 CCDC171Q6TFL3 1326 aa9.54□□□□□ -0.88
CCDC88C-214ENST00000557507 ZFHX2Q9C0A1 2572 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 C17orf102A2RUQ5 167 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 TREHO43280 583 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 PPP1R11O60927 126 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 TBX10O75333 385 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 PPFIA4O75335 1185 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 CFBP00751 764 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 SMIM10L2AP0DMW4 78 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 SMIM10L2BP0DMW5 78 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 CTNNB1P35222 781 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 HSD17B4P51659 736 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 SP2Q02086 613 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 GHRHRQ02643 423 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 CTC1Q2NKJ3 1217 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 MCMDC2Q4G0Z9 681 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 CELF3Q5SZQ8 465 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 MFSD6Q6ZSS7 791 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 DGKHQ86XP1 1220 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 MCF2L2Q86YR7 1114 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 SEPT8Q92599 483 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 ATP6V0A1Q93050 837 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 ZFP91Q96JP5 570 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 SNX27Q96L92 541 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 PDCD2LQ9BRP1 358 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 IFIH1Q9BYX4 1025 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 BCAS3Q9H6U6 928 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 JMJD4Q9H9V9 463 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 FAM50BQ9Y247 325 aa9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 MRPL11Q9Y3B7 192 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-214ENST00000557507 MYH9P35579 1960 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 GRM6O15303 877 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 LINC01565O15544 149 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 MBTPS2O43462 519 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 DHX16O60231 1041 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 KDM4AO75164 1064 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 CSPG5O95196 566 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 LGALS2P05162 132 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 PCP11498 1178 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 MYCLP12524 364 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 GTF2F1P35269 517 aaKnown RBP eCLIP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 HYAL1Q12794 435 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 PGM5Q15124 567 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 SMAD2Q15796 467 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 ASPRV1Q53RT3 343 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 HERC4Q5GLZ8 1057 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 ENAHQ8N8S7 591 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 PRSS33Q8NF86 280 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 ESR2Q92731 530 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 RC3H2Q9HBD1 1191 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 VAT1LQ9HCJ6 419 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 ADGRA3Q8IWK6 1321 aa9.52□□□□□ -0.89
CCDC88C-214ENST00000557507 C5orf67F2Z3F1 127 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 H3BRB1 525 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 CAND2O75155 1236 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 PARP1P09874 1014 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 HOXA13P31271 388 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 PDE1AP54750 535 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 SMAD4Q13485 552 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 STOX1Q6ZVD7 989 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 VSIG10LQ86VR7 867 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 TRIM50Q86XT4 487 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 RNF135Q8IUD6 432 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 STAG2Q8N3U4 1231 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 RNPEPQ9H4A4 650 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 RNF41Q9H4P4 317 aaPredicted RBP9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 TUT1Q9H6E5 874 aaKnown RBP9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 KAT14Q9H8E8 782 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 TELO2Q9Y4R8 837 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 MYO15AQ9UKN7 3530 aa9.51□□□□□ -0.89
CCDC88C-214ENST00000557507 GVINP1Q7Z2Y8 2422 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 B4E1Z4 1266 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 SEMA3FQ13275 785 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 SLC35G1Q2M3R5 365 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 IER5LQ5T953 404 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 KCNV1Q6PIU1 500 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 IQCA1Q86XH1 822 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 FIBCD1Q8N539 461 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 LMBR1Q8WVP7 490 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 MTMR8Q96EF0 704 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 IL17RAQ96F46 866 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 MFSD14AQ96MC6 490 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 ZSCAN10Q96SZ4 725 aaPredicted RBP9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 POP1Q99575 1024 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 C11orf84Q9BUA3 381 aaPredicted RBP9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 AMNQ9BXJ7 453 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 UPF3BQ9BZI7 483 aaKnown RBP9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 LMAN2LQ9H0V9 348 aa9.5□□□□□ -0.89
CCDC88C-214ENST00000557507 SETD4Q9NVD3 440 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms