RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 LRRCC1Q9C099 1032 aa6.92□□□□□ -1.3
VPS33B-207ENST00000557470 FTOQ9C0B1 505 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS33B-207ENST00000557470 CD320Q9NPF0 282 aa6.92□□□□□ -1.3
VPS33B-207ENST00000557470 CCPG1Q9ULG6 757 aa6.92□□□□□ -1.3
VPS33B-207ENST00000557470 PRR12Q9ULL5 1215 aa6.92□□□□□ -1.3
VPS33B-207ENST00000557470 COL4A4P53420 1690 aaPredicted RBP6.92□□□□□ -1.3
VPS33B-207ENST00000557470 TANC1Q9C0D5 1861 aa6.92□□□□□ -1.3
VPS33B-207ENST00000557470 SCN10AQ9Y5Y9 1956 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 KIF28PB7ZC32 967 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 PI4K2BG5E9Z4 385 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 RBAK-RBAKDNI3L0D1 243 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 NFIBO00712 420 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 ZBTB24O43167 697 aaPredicted RBP6.91□□□□□ -1.3
VPS33B-207ENST00000557470 NMT2O60551 498 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 BAIAP3O94812 1187 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 ICAM1P05362 532 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 CLK2P49760 499 aaKnown RBP6.91□□□□□ -1.3
VPS33B-207ENST00000557470 WDR5P61964 334 aaKnown RBP6.91□□□□□ -1.3
VPS33B-207ENST00000557470 HNRNPUQ00839 825 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS33B-207ENST00000557470 PDE4BQ07343 736 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 PPARAQ07869 468 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 BAATQ14032 418 aaPredicted RBP6.91□□□□□ -1.3
VPS33B-207ENST00000557470 RCSD1Q6JBY9 416 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 NFRKBQ6P4R8 1299 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 SLC30A10Q6XR72 485 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 OR6J1Q8NGC5 347 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 COPS5Q92905 334 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 IL17RBQ9NRM6 502 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 ECHDC1Q9NTX5 307 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 DDX19BQ9UMR2 479 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 STX8Q9UNK0 236 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 TET1Q8NFU7 2136 aa6.91□□□□□ -1.3
VPS33B-207ENST00000557470 PTPDC1A2A3K4 754 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 ZFYP08048 801 aaPredicted RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 SLC3A2P08195 630 aaKnown RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 TCF3P15923 654 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 SLC16A2P36021 539 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 KCNJ6P48051 423 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 DEFB103AP81534 67 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 BFSP2Q13515 415 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 GPNMBQ14956 572 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 PPP2R5BQ15173 497 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 CCDC96Q2M329 555 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 BRDTQ58F21 947 aaPredicted RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 MYSM1Q5VVJ2 828 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 TTBK2Q6IQ55 1244 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 B4GALNT3Q6L9W6 998 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 ALYREFQ86V81 257 aaKnown RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 CTAGE1Q96RT6 745 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 SEC62Q99442 399 aaKnown RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 NACAP1Q9BZK3 213 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 NAPBQ9H115 298 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 RANBP17Q9H2T7 1088 aaKnown RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 INCENPQ9NQS7 918 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 TOR4AQ9NXH8 423 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 ADD3Q9UEY8 706 aaKnown RBP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 MTUS1Q9ULD2 1270 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 NOD1Q9Y239 953 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS33B-207ENST00000557470 RAD50Q92878 1312 aa6.9□□□□□ -1.3
VPS33B-207ENST00000557470 PTPRSQ13332 1948 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 WDFY4Q6ZS81 3184 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 LOC102724159A0A0B4J2E5 919 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 TSPY2A6NKD2 308 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 PRR33A8MZF0 331 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 NKRFO15226 690 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS33B-207ENST00000557470 FOXP2O15409 715 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 ARIH2O95376 493 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 SELPP16109 830 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 EDNRBP24530 442 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 CALML3P27482 149 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 CHMP4BP1P59074 171 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 CTDSPL2Q05D32 466 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 PTPN11Q06124 597 aaPredicted RBP6.89□□□□□ -1.31
VPS33B-207ENST00000557470 PWP2Q15269 919 aaKnown RBP6.89□□□□□ -1.31
VPS33B-207ENST00000557470 PTGISQ16647 500 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 TCTN1Q2MV58 587 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 LRRFIP1Q32MZ4 808 aaKnown RBP6.89□□□□□ -1.31
VPS33B-207ENST00000557470 SYDE2Q5VT97 1194 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 AFAP1L1Q8TED9 768 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 SCFD2Q8WU76 684 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 DCAF4Q8WV16 495 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 CLEC4DQ8WXI8 215 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 DHX38Q92620 1227 aaKnown RBP6.89□□□□□ -1.31
VPS33B-207ENST00000557470 GPATCH3Q96I76 525 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 UBE2ZQ9H832 354 aaPredicted RBP6.89□□□□□ -1.31
VPS33B-207ENST00000557470 SUGCTQ9HAC7 445 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 LMCD1Q9NZU5 365 aa6.89□□□□□ -1.31
VPS33B-207ENST00000557470 TRIOO75962 3097 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 FRMPD2Q68DX3 1309 aaPredicted RBP6.88□□□□□ -1.31
VPS33B-207ENST00000557470 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.88□□□□□ -1.31
VPS33B-207ENST00000557470 LINC01553A4QN01 128 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 ST8SIA5O15466 376 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 RANBP6O60518 1105 aaKnown RBP6.88□□□□□ -1.31
VPS33B-207ENST00000557470 KPNA6O60684 536 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 NBNO60934 754 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 GJB5O95377 273 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 TXNP10599 105 aaKnown RBP6.88□□□□□ -1.31
VPS33B-207ENST00000557470 IL9P15248 144 aa6.88□□□□□ -1.31
VPS33B-207ENST00000557470 JUNDP17535 347 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms