RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 HPS3Q969F9 1004 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 EDEM3Q9BZQ6 932 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 SH2D4AQ9H788 454 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 BLOC1S4Q9NUP1 217 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 SNX12Q9UMY4 172 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 TFR2Q9UP52 801 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 SIK3Q9Y2K2 1263 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 PCDHA13Q9Y5I0 950 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 RCCD1A6NED2 376 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 C6orf229H3BNL8 230 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 SLC37A4O43826 429 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 BBOX1O75936 387 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 LCA5LO95447 670 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 TDP2O95551 362 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 GNA14O95837 355 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 TCP1P17987 556 aaKnown RBP7.75□□□□□ -1.17
TDP1-213ENST00000555880 EIF4A3P38919 411 aaKnown RBP7.75□□□□□ -1.17
TDP1-213ENST00000555880 NOVP48745 357 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 AARSP49588 968 aaKnown RBP eCLIP7.75□□□□□ -1.17
TDP1-213ENST00000555880 ITIH3Q06033 890 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 PICALMQ13492 652 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 CCDC40Q4G0X9 1142 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 PRR5LQ6MZQ0 368 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 RRAGAQ7L523 313 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 LRRC47Q8N1G4 583 aaKnown RBP7.75□□□□□ -1.17
TDP1-213ENST00000555880 DDX12PQ92771 950 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 ZDHHC16Q969W1 377 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 COA7Q96BR5 231 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 KCTD12Q96CX2 325 aaKnown RBP7.75□□□□□ -1.17
TDP1-213ENST00000555880 PNMA5Q96PV4 448 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 NT5C3AQ9H0P0 336 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 GLT8D2Q9H1C3 349 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 GPCPD1Q9NPB8 672 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 SWAP70Q9UH65 585 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 DDX25Q9UHL0 483 aaKnown RBP7.75□□□□□ -1.17
TDP1-213ENST00000555880 TSKSQ9UJT2 592 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 HYOU1Q9Y4L1 999 aa7.75□□□□□ -1.17
TDP1-213ENST00000555880 MYH10P35580 1976 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 LRRC53A6NM62 1247 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 LRRIQ3A6PVS8 624 aaPredicted RBP7.74□□□□□ -1.17
TDP1-213ENST00000555880 N4BP1O75113 896 aaKnown RBP7.74□□□□□ -1.17
TDP1-213ENST00000555880 RNF40O75150 1001 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 PHACTR2O75167 634 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 PRLRP16471 622 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 EPS15P42566 896 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 PAFAH1B1P43034 410 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 FKBP3Q00688 224 aaKnown RBP7.74□□□□□ -1.17
TDP1-213ENST00000555880 CRY2Q49AN0 593 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 SLC9C1Q4G0N8 1177 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 TMEM119Q4V9L6 283 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 GPATCH4Q5T3I0 446 aaKnown RBP7.74□□□□□ -1.17
TDP1-213ENST00000555880 DPP8Q6V1X1 898 aaPredicted RBP7.74□□□□□ -1.17
TDP1-213ENST00000555880 KRT26Q7Z3Y9 468 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 CCDC65Q8IXS2 484 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 CCDC155Q8N6L0 562 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 AFAP1L1Q8TED9 768 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 COG1Q8WTW3 980 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 NOX5Q96PH1 765 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 FAM204AQ9H8W3 233 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 LRRC4BQ9NT99 713 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 PODXL2Q9NZ53 605 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 ARHGAP20Q9P2F6 1191 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 HPCAL4Q9UM19 191 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 SUGT1Q9Y2Z0 365 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 COL4A3BPQ9Y5P4 624 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 DUSP10Q9Y6W6 482 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 MYH4Q9Y623 1939 aa7.74□□□□□ -1.17
TDP1-213ENST00000555880 MYO3BQ8WXR4 1341 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 MYH7BA7E2Y1 1941 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 C10orf71Q711Q0 1435 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 TRAF5O00463 557 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 ZNF185O15231 689 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 SLC26A4O43511 780 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 SSBP05455 408 aaKnown RBP eCLIP7.73□□□□□ -1.17
TDP1-213ENST00000555880 HLA-DOAP06340 250 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 PLEKP08567 350 aaPredicted RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 SNHG28P0DPA3 235 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 MAGEA1P43355 309 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 NAP1L1P55209 391 aaKnown RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 EIF6P56537 245 aaKnown RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 C2orf54Q08AI8 447 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 ZNF543Q08ER8 600 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 TDRD12Q587J7 1177 aaKnown RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 FAM26FQ5R3K3 315 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 SFMBT2Q5VUG0 894 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 PDXDC1Q6P996 788 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 LRRC55Q6ZSA7 311 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 ZNF572Q7Z3I7 529 aaPredicted RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 TMC4Q7Z404 712 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 AMIGO3Q86WK7 504 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 ADGRF4Q8IZF3 695 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 MMGT1Q8N4V1 131 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 RNF10Q8N5U6 811 aaKnown RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 TBC1D16Q8TBP0 767 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 SYN2Q92777 582 aaPredicted RBP7.73□□□□□ -1.17
TDP1-213ENST00000555880 DRC1Q96MC2 740 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 CEP63Q96MT8 703 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 PSTPIP2Q9H939 334 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 JMJD4Q9H9V9 463 aa7.73□□□□□ -1.17
TDP1-213ENST00000555880 PANK4Q9NVE7 773 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms