RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 STYK1Q6J9G0 422 aa6.28□□□□□ -1.4
SCFD1-210ENST00000553693 BORAQ6PGQ7 559 aa6.28□□□□□ -1.4
SCFD1-210ENST00000553693 TEPPQ6URK8 271 aa6.28□□□□□ -1.4
SCFD1-210ENST00000553693 PIP4K2CQ8TBX8 421 aa6.28□□□□□ -1.4
SCFD1-210ENST00000553693 SPATA9Q9BWV2 254 aa6.28□□□□□ -1.4
SCFD1-210ENST00000553693 ASH2LQ9UBL3 628 aa6.28□□□□□ -1.4
SCFD1-210ENST00000553693 PRICKLE3O43900 615 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-210ENST00000553693 GNAT1P11488 350 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 CNR2P34972 360 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 PLP2Q04941 152 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 ADAM9Q13443 819 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 RGL3Q3MIN7 710 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 PRAMEF18Q5VWM3 479 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 STK32CQ86UX6 486 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 IFNL3Q8IZI9 196 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 SYT3Q9BQG1 590 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 ALG1Q9BT22 464 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 HIRIP3Q9BW71 556 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-210ENST00000553693 JAM3Q9BX67 310 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 CCDC113Q9H0I3 377 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 HSPBP1Q9NZL4 362 aa6.27□□□□□ -1.41
SCFD1-210ENST00000553693 SSRP1Q08945 709 aaKnown RBP6.26□□□□□ -1.41
SCFD1-210ENST00000553693 NTRK3Q16288 839 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 SPATS1Q496A3 300 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 PRR31Q5SQ13 230 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 YOD1Q5VVQ6 348 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-210ENST00000553693 KCNT2Q6UVM3 1135 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 OTOP3Q7RTS5 596 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 FERMT3Q86UX7 667 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 LGI4Q8N135 537 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 DDX1Q92499 740 aaKnown RBP6.26□□□□□ -1.41
SCFD1-210ENST00000553693 ARMC5Q96C12 935 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 IPO9Q96P70 1041 aaKnown RBP6.26□□□□□ -1.41
SCFD1-210ENST00000553693 CDC6Q99741 560 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 SIRPGQ9P1W8 387 aa6.26□□□□□ -1.41
SCFD1-210ENST00000553693 PPARGC1AQ9UBK2 798 aaKnown RBP6.26□□□□□ -1.41
SCFD1-210ENST00000553693 MROH6A6NGR9 719 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 C9orf118A6NHY6 69 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 FAM47E-STBD1D6RA91 191 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 K7ESM1 405 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 OVOL3O00110 214 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 LRG1P02750 347 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 SOD2P04179 222 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 ZNF28P17035 718 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 SCUBE1Q8IWY4 988 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 UHMK1Q8TAS1 419 aaKnown RBP6.25□□□□□ -1.41
SCFD1-210ENST00000553693 LCORQ96JN0 433 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-210ENST00000553693 L2HGDHQ9H9P8 463 aa6.25□□□□□ -1.41
SCFD1-210ENST00000553693 CCDC85CA6NKD9 419 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 DDX3XO00571 662 aaKnown RBP eCLIP6.24□□□□□ -1.411e-13■■■■□ 23.8
SCFD1-210ENST00000553693 AQP7O14520 342 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 SLC27A2O14975 620 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 AKAP8O43823 692 aaKnown RBP6.24□□□□□ -1.41
SCFD1-210ENST00000553693 SUMO1P63165 101 aaKnown RBP6.24□□□□□ -1.41
SCFD1-210ENST00000553693 EFEMP1Q12805 493 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 TUSC3Q13454 348 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 MCTP2Q6DN12 878 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 VASNQ6EMK4 673 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 SPATC1Q76KD6 591 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 MAMDC2Q7Z304 686 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-210ENST00000553693 PLEKHH3Q7Z736 793 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 TXNDC5Q8NBS9 432 aaKnown RBP6.24□□□□□ -1.41
SCFD1-210ENST00000553693 ZSWIM3Q96MP5 696 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 KCNJ15Q99712 375 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 DUSP10Q9Y6W6 482 aa6.24□□□□□ -1.41
SCFD1-210ENST00000553693 BLACEA4D250 179 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 ADCY3O60266 1144 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 CYP1A1P04798 512 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-210ENST00000553693 INSRRP14616 1297 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 NAT1P18440 290 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 GTF2F1P35269 517 aaKnown RBP eCLIP6.23□□□□□ -1.41
SCFD1-210ENST00000553693 HABP4Q5JVS0 413 aaKnown RBP6.23□□□□□ -1.41
SCFD1-210ENST00000553693 TMC5Q6UXY8 1006 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 ZBTB38Q8NAP3 1195 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-210ENST00000553693 PFDN2Q9UHV9 154 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 CROTQ9UKG9 612 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 DSEQ9UL01 958 aa6.23□□□□□ -1.41
SCFD1-210ENST00000553693 TRBV23-1A0A0A0MS06 115 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 GRIN1Q05586 938 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 PAK1Q13153 545 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 PUM1Q14671 1186 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCFD1-210ENST00000553693 SURF1Q15526 300 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 ZNF827Q17R98 1081 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 LRP10Q7Z4F1 713 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-210ENST00000553693 MTDHQ86UE4 582 aaKnown RBP6.22□□□□□ -1.41
SCFD1-210ENST00000553693 PTPRN2Q92932 1015 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 YTHDC1Q96MU7 727 aaKnown RBP6.22□□□□□ -1.41
SCFD1-210ENST00000553693 PDGFDQ9GZP0 370 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-210ENST00000553693 TMEM168Q9H0V1 697 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 IPPKQ9H8X2 491 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 DLL4Q9NR61 685 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 FTSJ1Q9UET6 329 aa6.22□□□□□ -1.41
SCFD1-210ENST00000553693 PLATP00750 562 aa6.21□□□□□ -1.42
SCFD1-210ENST00000553693 ITGB3P05106 788 aa6.21□□□□□ -1.42
SCFD1-210ENST00000553693 COL6A2P12110 1019 aa6.21□□□□□ -1.42
SCFD1-210ENST00000553693 FAHP16930 419 aa6.21□□□□□ -1.42
SCFD1-210ENST00000553693 IL13P35225 146 aa6.21□□□□□ -1.42
SCFD1-210ENST00000553693 LONRF2Q1L5Z9 754 aa6.21□□□□□ -1.42
SCFD1-210ENST00000553693 PAN2Q504Q3 1202 aaKnown RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms