RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 ZP2Q05996 745 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 MKRN4PQ13434 485 aaPredicted RBP13.71□□□□□ -0.21
SRP54-203ENST00000553544 COL19A1Q14993 1142 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 CDC37Q16543 378 aaPredicted RBP13.71□□□□□ -0.21
SRP54-203ENST00000553544 MYSM1Q5VVJ2 828 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 SERINC5Q86VE9 423 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 SEPT8Q92599 483 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 CPVLQ9H3G5 476 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 CLDND1Q9NY35 253 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 COL20A1Q9P218 1284 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 TAF6LQ9Y6J9 622 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 TANC1Q9C0D5 1861 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 E7EWF7 191 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 EIF2AK2P19525 551 aaKnown RBP13.7□□□□□ -0.22
SRP54-203ENST00000553544 ASPRV1Q53RT3 343 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 STOX1Q6ZVD7 989 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 SKAP1Q86WV1 359 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 FBXO11Q86XK2 927 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 ADGRF4Q8IZF3 695 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 ATP6V0A1Q93050 837 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 SPATA33Q96N06 139 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 UBAC1Q9BSL1 405 aa13.7□□□□□ -0.22
SRP54-203ENST00000553544 C17orf102A2RUQ5 167 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 RB1P06400 928 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 TGFB3P10600 412 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 HOXD8P13378 290 aaPredicted RBP13.69□□□□□ -0.22
SRP54-203ENST00000553544 TRDNQ13061 729 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 HIC1Q14526 733 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 BMP2KLQ5H9B9 411 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 CELF3Q5SZQ8 465 aaKnown RBP13.69□□□□□ -0.22
SRP54-203ENST00000553544 IFIT1BQ5T764 474 aaKnown RBP13.69□□□□□ -0.22
SRP54-203ENST00000553544 HFE2Q6ZVN8 426 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 IL17RAQ96F46 866 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 POP1Q99575 1024 aaKnown RBP13.69□□□□□ -0.22
SRP54-203ENST00000553544 LSG1Q9H089 658 aaKnown RBP13.69□□□□□ -0.22
SRP54-203ENST00000553544 VAT1LQ9HCJ6 419 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 PXMP2Q9NR77 195 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 RBM8AQ9Y5S9 174 aaKnown RBP13.69□□□□□ -0.22
SRP54-203ENST00000553544 TRIOO75962 3097 aa13.69□□□□□ -0.22
SRP54-203ENST00000553544 KIAA1217Q5T5P2 1943 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 H3BRB1 525 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 DHX16O60231 1041 aaKnown RBP13.68□□□□□ -0.22
SRP54-203ENST00000553544 CAND2O75155 1236 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 CFBP00751 764 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 PARP1P09874 1014 aaKnown RBP13.68□□□□□ -0.22
SRP54-203ENST00000553544 MYCLP12524 364 aaPredicted RBP13.68□□□□□ -0.22
SRP54-203ENST00000553544 IRS1P35568 1242 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 QRICH1Q2TAL8 776 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 HSDL1Q3SXM5 330 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 NCOA7Q8NI08 942 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 ESYT1Q9BSJ8 1104 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 C16orf70Q9BSU1 422 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 IFIH1Q9BYX4 1025 aaKnown RBP13.68□□□□□ -0.22
SRP54-203ENST00000553544 TUT1Q9H6E5 874 aaKnown RBP13.68□□□□□ -0.22
SRP54-203ENST00000553544 MLXIPQ9HAP2 919 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 MAP3K20Q9NYL2 800 aaKnown RBP13.68□□□□□ -0.22
SRP54-203ENST00000553544 PTPRSQ13332 1948 aa13.68□□□□□ -0.22
SRP54-203ENST00000553544 COL4A4P53420 1690 aaPredicted RBP13.67□□□□□ -0.22
SRP54-203ENST00000553544 PALM3A6NDB9 673 aaPredicted RBP13.67□□□□□ -0.22
SRP54-203ENST00000553544 GGPS1O95749 300 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 GNAT1P11488 350 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 LTBRP36941 435 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 ANTXR2P58335 489 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 SMAD2Q15796 467 aaKnown RBP13.67□□□□□ -0.22
SRP54-203ENST00000553544 CTC1Q2NKJ3 1217 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 HERC4Q5GLZ8 1057 aaPredicted RBP13.67□□□□□ -0.22
SRP54-203ENST00000553544 RPAINQ86UA6 219 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 VSIG10LQ86VR7 867 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 MB21D2Q8IYB1 491 aaPredicted RBP13.67□□□□□ -0.22
SRP54-203ENST00000553544 STAG2Q8N3U4 1231 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 FIBCD1Q8N539 461 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 MTMR8Q96EF0 704 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 RNPEPQ9H4A4 650 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 JMJD4Q9H9V9 463 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 MAD2L2Q9UI95 211 aa13.67□□□□□ -0.22
SRP54-203ENST00000553544 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.66□□□□□ -0.22
SRP54-203ENST00000553544 C5orf67F2Z3F1 127 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 RBAK-RBAKDNI3L0D1 243 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 IFIT3O14879 490 aaKnown RBP13.66□□□□□ -0.22
SRP54-203ENST00000553544 TREHO43280 583 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 SORBS3O60504 671 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 RGS20O76081 388 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 SMIM10L2AP0DMW4 78 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 SMIM10L2BP0DMW5 78 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 BMPR1AP36894 532 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 SP2Q02086 613 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 TROAPQ12815 778 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 NECTIN1Q15223 517 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 PKN1Q16512 942 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 RALYLQ86SE5 291 aaKnown RBP13.66□□□□□ -0.22
SRP54-203ENST00000553544 SAMD3Q8N6K7 520 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 IGDCC4Q8TDY8 1250 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 EDAQ92838 391 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 APBB2Q92870 758 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 PDCD2LQ9BRP1 358 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 C11orf84Q9BUA3 381 aaPredicted RBP13.66□□□□□ -0.22
SRP54-203ENST00000553544 AMNQ9BXJ7 453 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 USP26Q9BXU7 913 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 LMAN2LQ9H0V9 348 aa13.66□□□□□ -0.22
SRP54-203ENST00000553544 SENP2Q9HC62 589 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms