RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ADCY1Q08828 1119 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 SMAD2Q15796 467 aaKnown RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 RTP2Q5QGT7 225 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 SHISA2Q6UWI4 295 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 TTLL7Q6ZT98 887 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 SLC35G2Q8TBE7 412 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 TEKT5Q96M29 485 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 PTCHD1Q96NR3 888 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 NAP1L4Q99733 375 aaKnown RBP7.28□□□□□ -1.24
SCFD1-208ENST00000553278 ZDHHC5Q9C0B5 715 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 CSRNP2Q9H175 543 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 CLDND1Q9NY35 253 aa7.28□□□□□ -1.24
SCFD1-208ENST00000553278 GNAT3A8MTJ3 354 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 ZNF561-AS1K7EIQ3 104 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 IGF2BP3O00425 579 aaKnown RBP eCLIP7.27□□□□□ -1.25
SCFD1-208ENST00000553278 FGF10O15520 208 aaPredicted RBP7.27□□□□□ -1.25
SCFD1-208ENST00000553278 AP1G1O43747 822 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 HIP1RO75146 1068 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 TBC1D8O95759 1140 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 SRFP11831 508 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 KRT15P19012 456 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 ZNF280AP59817 542 aaPredicted RBP7.27□□□□□ -1.25
SCFD1-208ENST00000553278 LAPTM5Q13571 262 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 NFKBIBQ15653 356 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 GPR19Q15760 415 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 EP400NLQ6ZTU2 488 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 FRMD7Q6ZUT3 714 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 CATIPQ7Z7H3 387 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 OSTM1Q86WC4 334 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 CMIPQ8IY22 773 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 LINC00116Q8NCU8 138 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 TNIP3Q96KP6 325 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 ELF4Q99607 663 aaPredicted RBP7.27□□□□□ -1.25
SCFD1-208ENST00000553278 RNF38Q9H0F5 515 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 CAPN6Q9Y6Q1 641 aa7.27□□□□□ -1.25
SCFD1-208ENST00000553278 PRR33A8MZF0 331 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 FAM155AB1AL88 458 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 RBAK-RBAKDNI3L0D1 243 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 NPHP1O15259 732 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 PMM2O15305 246 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 ZRANB2O95218 330 aaKnown RBP eCLIP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 ZBTB48P10074 688 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 GNAT1P11488 350 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 BCL6P41182 706 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 JAM2P57087 298 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 GJA9P57773 515 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 SPIRE1Q08AE8 756 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 INO80DQ53TQ3 878 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 ZFYVE27Q5T4F4 411 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 MBLAC2Q68D91 279 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 HHIPL2Q6UWX4 724 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 B3GNT9Q6UX72 402 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 LINC00114Q6XXX2 140 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 TOGARAM2Q6ZUX3 1019 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 FAM214BQ7L5A3 538 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 CPNE8Q86YQ8 564 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 NAT16Q8N8M0 369 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 SSH1Q8WYL5 1049 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 GJA10Q969M2 543 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 UTP4Q969X6 686 aaKnown RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 LENG1Q96BZ8 264 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 MYRFLQ96LU7 910 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 ACAP3Q96P50 834 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 UBL7Q96S82 380 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 CDADC1Q9BWV3 514 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 SMURF1Q9HCE7 757 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 PTPRHQ9HD43 1115 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 CCM2LQ9NUG4 571 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-208ENST00000553278 TCFL5Q9UL49 500 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 PHTF1Q9UMS5 762 aa7.26□□□□□ -1.25
SCFD1-208ENST00000553278 H7BY64 318 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 KDM1AO60341 852 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 NPHS1O60500 1241 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 TCEA3O75764 348 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 FGAP02671 866 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 CD40P25942 277 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 KIF11P52732 1056 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 POU5F1BQ06416 359 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 GALEQ14376 348 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 GRIK4Q16099 956 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 FAM83BQ5T0W9 1011 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 CYP2R1Q6VVX0 501 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 CHST15Q7LFX5 561 aaPredicted RBP7.25□□□□□ -1.25
SCFD1-208ENST00000553278 SRGAP1Q7Z6B7 1085 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 ZZZ3Q8IYH5 903 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 MIER2Q8N344 545 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 USHBP1Q8N6Y0 703 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 TMEM169Q96HH4 297 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 TAAR9Q96RI9 348 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 DUSP15Q9H1R2 295 aaPredicted RBP7.25□□□□□ -1.25
SCFD1-208ENST00000553278 KCNF1Q9H3M0 494 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 FAM204AQ9H8W3 233 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 SP110Q9HB58 689 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 NLRC4Q9NPP4 1024 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 ACSS2Q9NR19 701 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 AP5S1Q9NUS5 200 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 NOP53Q9NZM5 478 aaKnown RBP7.25□□□□□ -1.25
SCFD1-208ENST00000553278 ADGRE2Q9UHX3 823 aa7.25□□□□□ -1.25
SCFD1-208ENST00000553278 CYP17A1P05093 508 aa7.24□□□□□ -1.25
SCFD1-208ENST00000553278 GMPRP36959 345 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms