RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MED4Q9NPJ6 270 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 SUFUQ9UMX1 484 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 PPP2R2CQ9Y2T4 447 aa8.57□□□□□ -1.04
LIMA1-216ENST00000552909 LAMA2P24043 3122 aaKnown RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CBFA2T2O43439 604 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 JAK2O60674 1132 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 FCER1AP12319 257 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CCL5P13501 91 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 USP8P40818 1118 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 FANCCQ00597 558 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 SYDE2Q5VT97 1194 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 DPP9Q86TI2 863 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CNNM3Q8NE01 707 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 ERCC4Q92889 916 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 WDR24Q96S15 920 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 APBA2Q99767 749 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 RNF208Q9H0X6 261 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 LY9Q9HBG7 655 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CTDP1Q9Y5B0 961 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CEP290O15078 2479 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 GOLGA8BA8MQT2 603 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 N4BP1O75113 896 aaKnown RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 HMGCRP04035 888 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 HOXC6P09630 235 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 ADD1P35611 737 aaKnown RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 LIFRP42702 1097 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 ME1P48163 572 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CHMP4BP1P59074 171 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 CACNB2Q08289 660 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 TROAPQ12815 778 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 WTAPQ15007 396 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 SLC35G1Q2M3R5 365 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 ATL3Q6DD88 541 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 TMTC2Q8N394 836 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 DHX58Q96C10 678 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 ZNF396Q96N95 335 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 MMP19Q99542 508 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 MYL10Q9BUA6 226 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 RANBP17Q9H2T7 1088 aaKnown RBP8.56□□□□□ -1.04
LIMA1-216ENST00000552909 ACBD3Q9H3P7 528 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 VAT1LQ9HCJ6 419 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 MAD2L2Q9UI95 211 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 SLC12A7Q9Y666 1083 aa8.56□□□□□ -1.04
LIMA1-216ENST00000552909 PPFIA3O75145 1194 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 ERLIN2O94905 339 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 IGHA2P01877 340 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 ALAS1P13196 640 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 PRKAR2AP13861 404 aaKnown RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 RXRAP19793 462 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 RGS19P49795 217 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 MNAT1P51948 309 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 OAZ1P54368 228 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 UBXN2AP68543 259 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 GPATCH4Q5T3I0 446 aaKnown RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 MAP3K21Q5TCX8 1036 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 SYNE3Q6ZMZ3 975 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 SRGAP1Q7Z6B7 1085 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 RPAINQ86UA6 219 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 ADGRF4Q8IZF3 695 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 ABRAQ8N0Z2 381 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 MRPS27Q92552 414 aaKnown RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 TMEM106CQ9BVX2 250 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 KIAA1468Q9P260 1216 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 LAMA3Q16787 3333 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 CTDNEP1O95476 244 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 ICAM1P05362 532 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 PARP1P09874 1014 aaKnown RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 FDX1P10109 184 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 CCND3P30281 292 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 NLRP12P59046 1061 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 TUBB4BP68371 445 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 KCTD2Q14681 263 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 NCAPHQ15003 741 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 PRAMEF19Q5SWL8 479 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 APOA5Q6Q788 366 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 SGMS1Q86VZ5 419 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 FMR1NBQ8N0W7 255 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 SHISA4Q96DD7 197 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 MAML3Q96JK9 1138 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 DEFB118Q96PH6 123 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 PURBQ96QR8 312 aaKnown RBP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 FTOQ9C0B1 505 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 GBP3Q9H0R5 595 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 RNF146Q9NTX7 359 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 BCCIPQ9P287 314 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMA1-216ENST00000552909 RAB21Q9UL25 225 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 CCPG1Q9ULG6 757 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 L1RE1Q9UN81 338 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 PLXNA1Q9UIW2 1896 aa8.55□□□□□ -1.04
LIMA1-216ENST00000552909 MCM3APO60318 1980 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 DNAJC25-GNG10A0A024R161 153 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 PALM3A6NDB9 673 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 KLRF2D3W0D1 207 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 IKBKBO14920 756 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 ZBTB43O43298 467 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 SERPINC1P01008 464 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 GJB1P08034 283 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 METAP2P50579 478 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMA1-216ENST00000552909 UBASH3AP57075 661 aa8.54□□□□□ -1.04
LIMA1-216ENST00000552909 SATB1Q01826 763 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms