RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PLD6Q8N2A8 252 aaKnown RBP8.09□□□□□ -1.11
LIMA1-210ENST00000552045 CPA6Q8N4T0 437 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 SHKBP1Q8TBC3 707 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 NETO1Q8TDF5 533 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 TRMT2BQ96GJ1 504 aaKnown RBP8.09□□□□□ -1.11
LIMA1-210ENST00000552045 ANKRD6Q9Y2G4 727 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 DVL2O14641 736 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 PPP1R11O60927 126 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 U2AF1L5P0DN76 240 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 COL6A2P12110 1019 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 SMAD3P84022 425 aaKnown RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 RBM10P98175 930 aaKnown RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 U2AF1Q01081 240 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 TCIRG1Q13488 830 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 BIRC2Q13490 618 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 SMAD2Q15796 467 aaKnown RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 TMEM240Q5SV17 173 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 OTOP3Q7RTS5 596 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 PNMA8AQ86V59 439 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 PTRH1Q86Y79 214 aaKnown RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 TEX2Q8IWB9 1127 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 TPH2Q8IWU9 490 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 KIAA1958Q8N8K9 716 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 RPS6KC1Q96S38 1066 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 ELF4Q99607 663 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 EPB41L1Q9H4G0 881 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 MARCH2Q9P0N8 246 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 GULP1Q9UBP9 304 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 PNMA8BQ9ULN7 279 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-210ENST00000552045 X6R8D5 127 aa8.08□□□□□ -1.12
LIMA1-210ENST00000552045 KCNK3O14649 394 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 NKRFO15226 690 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMA1-210ENST00000552045 LSP1P33241 339 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 LRRC32Q14392 662 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 GPR158Q5T848 1215 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 ANGEL2Q5VTE6 544 aaKnown RBP8.07□□□□□ -1.12
LIMA1-210ENST00000552045 FSTL4Q6MZW2 842 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 NOSTRINQ8IVI9 506 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 CMIPQ8IY22 773 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 TOPORSQ9NS56 1045 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-210ENST00000552045 TNFRSF10DQ9UBN6 386 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 ZNF652Q9Y2D9 606 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 GIT1Q9Y2X7 761 aa8.07□□□□□ -1.12
LIMA1-210ENST00000552045 TRIM75PA6NK02 468 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 C22orf46C9J442 243 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 MAN2B1O00754 1011 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 IGHA1P01876 353 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 PF4V1P10720 104 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 SCAND1P57086 179 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 HDAC1Q13547 482 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-210ENST00000552045 SLC4A10Q6U841 1118 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 DGKHQ86XP1 1220 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 ZNF610Q8N9Z0 462 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 PLEKHO2Q8TD55 490 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 SH3RF2Q8TEC5 729 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 PCIF1Q9H4Z3 704 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 TOMM22Q9NS69 142 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 MKS1Q9NXB0 559 aa8.06□□□□□ -1.12
LIMA1-210ENST00000552045 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMA1-210ENST00000552045 COA3Q9Y2R0 106 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-210ENST00000552045 NOC2LQ9Y3T9 749 aaKnown RBP8.06□□□□□ -1.12
LIMA1-210ENST00000552045 FADS2P1A8MWK0 482 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 VSTM5A8MXK1 200 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 GSC2O15499 205 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 CYP26A1O43174 497 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA12O60330 932 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 HIP1RO75146 1068 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 DGKIO75912 1065 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 IGLV1-40P01703 118 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 FUCA1P04066 466 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PROCP04070 461 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 KIF11P52732 1056 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 ODF1Q14990 250 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 NLGN2Q8NFZ4 835 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 LMBR1Q8WVP7 490 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 MAP6Q96JE9 813 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 SPOCK3Q9BQ16 436 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 ZDHHC5Q9C0B5 715 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 OBP2AQ9NY56 170 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 SRPK3Q9UPE1 567 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA9Q9Y5G4 932 aaKnown RBP8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA8Q9Y5G5 932 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA7Q9Y5G6 932 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA6Q9Y5G7 932 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA3Q9Y5H0 932 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 PCDHGA2Q9Y5H1 932 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 MRFAP1Q9Y605 127 aa8.05□□□□□ -1.12
LIMA1-210ENST00000552045 GOLGA8AA7E2F4 631 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 GOLGA8BA8MQT2 603 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 MSTNO14793 375 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 CYP2C19P33261 490 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 GPR3P46089 330 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 MINDY4Q4G0A6 757 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 FIGNQ5HY92 759 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 PPP4R4Q6NUP7 873 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 KSR2Q6VAB6 950 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 EP400NLQ6ZTU2 488 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 SLCO6A1Q86UG4 719 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 RIOX2Q8IUF8 465 aa8.04□□□□□ -1.12
LIMA1-210ENST00000552045 SMC5Q8IY18 1101 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms