RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 AEBP2Q6ZN18 517 aaPredicted RBP25■■□□□ 1.59
LIMA1-210ENST00000552045 CHIC1Q5VXU3 224 aa24.61■■□□□ 1.53
LIMA1-210ENST00000552045 PHF23Q9BUL5 403 aaPredicted RBP21.63■■□□□ 1.05
LIMA1-210ENST00000552045 SENP3Q9H4L4 574 aaPredicted RBP21.23■□□□□ 0.99
LIMA1-210ENST00000552045 PLPPR3Q6T4P5 718 aa20.06■□□□□ 0.8
LIMA1-210ENST00000552045 FOXD1Q16676 465 aa19.65■□□□□ 0.74
LIMA1-210ENST00000552045 PPP6R1Q9UPN7 881 aa19.02■□□□□ 0.64
LIMA1-210ENST00000552045 ADRA2BP18089 450 aa19■□□□□ 0.63
LIMA1-210ENST00000552045 PIAS4Q8N2W9 510 aaPredicted RBP18.57■□□□□ 0.56
LIMA1-210ENST00000552045 KCNA4P22459 653 aa18.18■□□□□ 0.5
LIMA1-210ENST00000552045 MSH5O43196 834 aa18.1■□□□□ 0.49
LIMA1-210ENST00000552045 EHMT2Q96KQ7 1210 aa17.86■□□□□ 0.45
LIMA1-210ENST00000552045 PPP4R3CPQ6ZMV5 832 aa17.69■□□□□ 0.42
LIMA1-210ENST00000552045 SLC4A1APQ9BWU0 796 aaKnown RBP17.45■□□□□ 0.38
LIMA1-210ENST00000552045 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
LIMA1-210ENST00000552045 NCBP3Q53F19 620 aaKnown RBP17.43■□□□□ 0.38
LIMA1-210ENST00000552045 CSRNP3Q8WYN3 585 aa17.32■□□□□ 0.36
LIMA1-210ENST00000552045 NPM3O75607 178 aaKnown RBP17.2■□□□□ 0.34
LIMA1-210ENST00000552045 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
LIMA1-210ENST00000552045 CNKSR2Q8WXI2 1034 aa17.17■□□□□ 0.34
LIMA1-210ENST00000552045 DMRT2Q9Y5R5 561 aa16.97■□□□□ 0.31
LIMA1-210ENST00000552045 RNF216Q9NWF9 866 aaPredicted RBP16.79■□□□□ 0.28
LIMA1-210ENST00000552045 ZBTB22O15209 634 aa16.76■□□□□ 0.27
LIMA1-210ENST00000552045 HOXD11P31277 338 aaPredicted RBP16.69■□□□□ 0.26
LIMA1-210ENST00000552045 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
LIMA1-210ENST00000552045 FOXD4L1Q9NU39 408 aa16.5■□□□□ 0.23
LIMA1-210ENST00000552045 POTEDQ86YR6 584 aa16.17■□□□□ 0.18
LIMA1-210ENST00000552045 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
LIMA1-210ENST00000552045 SLC4A2P04920 1241 aa16.06■□□□□ 0.16
LIMA1-210ENST00000552045 MYCNP04198 464 aaPredicted RBP15.87■□□□□ 0.13
LIMA1-210ENST00000552045 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.87■□□□□ 0.13
LIMA1-210ENST00000552045 ATXN8OSP0DMR3 200 aa15.85■□□□□ 0.13
LIMA1-210ENST00000552045 U3KPZ7 1027 aaPredicted RBP15.64■□□□□ 0.09
LIMA1-210ENST00000552045 RTN4Q9NQC3 1192 aaKnown RBP15.61■□□□□ 0.09
LIMA1-210ENST00000552045 AMER1Q5JTC6 1135 aaPredicted RBP15.6■□□□□ 0.09
LIMA1-210ENST00000552045 FKBP8Q14318 412 aa15.59■□□□□ 0.09
LIMA1-210ENST00000552045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.53■□□□□ 0.08
LIMA1-210ENST00000552045 HNRNPUL2Q1KMD3 747 aaKnown RBP15.53■□□□□ 0.08
LIMA1-210ENST00000552045 RNF39Q9H2S5 420 aa15.51■□□□□ 0.07
LIMA1-210ENST00000552045 SAMD1Q6SPF0 538 aaPredicted RBP15.48■□□□□ 0.07
LIMA1-210ENST00000552045 ATF5Q9Y2D1 282 aaPredicted RBP15.41■□□□□ 0.06
LIMA1-210ENST00000552045 SLC24A1O60721 1099 aa15.38■□□□□ 0.05
LIMA1-210ENST00000552045 APLP2Q06481 763 aa15.35■□□□□ 0.05
LIMA1-210ENST00000552045 C1QBPQ07021 282 aaKnown RBP15.35■□□□□ 0.05
LIMA1-210ENST00000552045 SPINK5Q9NQ38 1064 aaPredicted RBP15.13■□□□□ 0.01
LIMA1-210ENST00000552045 ZNF219Q9P2Y4 722 aaPredicted RBP15.09■□□□□ 0.01
LIMA1-210ENST00000552045 CAPN15O75808 1086 aa15.07■□□□□ 0
LIMA1-210ENST00000552045 TRHP20396 242 aaPredicted RBP15.02■□□□□ -0
LIMA1-210ENST00000552045 CACNB1Q02641 598 aaPredicted RBP14.96□□□□□ -0.01
LIMA1-210ENST00000552045 POLA2Q14181 598 aa14.83□□□□□ -0.04
LIMA1-210ENST00000552045 SPDYE4A6NLX3 237 aa14.81□□□□□ -0.04
LIMA1-210ENST00000552045 FBXO3Q9UK99 471 aa14.81□□□□□ -0.04
LIMA1-210ENST00000552045 DSG3P32926 999 aa14.8□□□□□ -0.04
LIMA1-210ENST00000552045 ABCB7O75027 752 aa14.78□□□□□ -0.04
LIMA1-210ENST00000552045 MKRN4PQ13434 485 aaPredicted RBP14.77□□□□□ -0.05
LIMA1-210ENST00000552045 PROM2Q8N271 834 aa14.7□□□□□ -0.06
LIMA1-210ENST00000552045 FBLN2P98095 1184 aa14.67□□□□□ -0.06
LIMA1-210ENST00000552045 ZBTB12Q9Y330 459 aaPredicted RBP14.66□□□□□ -0.06
LIMA1-210ENST00000552045 VASPP50552 380 aaPredicted RBP14.58□□□□□ -0.08
LIMA1-210ENST00000552045 IFNLR1Q8IU57 520 aaPredicted RBP14.47□□□□□ -0.09
LIMA1-210ENST00000552045 PLCB2Q00722 1185 aa14.39□□□□□ -0.11
LIMA1-210ENST00000552045 OSCARQ8IYS5 282 aa14.33□□□□□ -0.12
LIMA1-210ENST00000552045 PKD2Q13563 968 aa14.29□□□□□ -0.12
LIMA1-210ENST00000552045 DCAF8L2P0C7V8 631 aa14.28□□□□□ -0.12
LIMA1-210ENST00000552045 SPDYE2BA6NHP3 402 aa14.27□□□□□ -0.13
LIMA1-210ENST00000552045 SPDYE6P0CI01 402 aa14.27□□□□□ -0.13
LIMA1-210ENST00000552045 SPDYE2Q495Y8 402 aa14.27□□□□□ -0.13
LIMA1-210ENST00000552045 ZNF692Q9BU19 519 aaPredicted RBP14.2□□□□□ -0.14
LIMA1-210ENST00000552045 HAP1P54257 671 aaPredicted RBP14.17□□□□□ -0.14
LIMA1-210ENST00000552045 SSUH2Q9Y2M2 353 aa14.17□□□□□ -0.14
LIMA1-210ENST00000552045 SPOCK2Q92563 424 aa14.15□□□□□ -0.14
LIMA1-210ENST00000552045 KLHL34Q8N239 644 aa14.14□□□□□ -0.15
LIMA1-210ENST00000552045 RBM42Q9BTD8 480 aaKnown RBP14.13□□□□□ -0.15
LIMA1-210ENST00000552045 STAG3Q9UJ98 1225 aa14.13□□□□□ -0.15
LIMA1-210ENST00000552045 ECM2O94769 699 aaPredicted RBP14.04□□□□□ -0.16
LIMA1-210ENST00000552045 PLCD3Q8N3E9 789 aa14.02□□□□□ -0.17
LIMA1-210ENST00000552045 PABPN1Q86U42 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
LIMA1-210ENST00000552045 VSIG10Q8N0Z9 540 aa14□□□□□ -0.17
LIMA1-210ENST00000552045 AKT1S1Q96B36 256 aa13.99□□□□□ -0.17
LIMA1-210ENST00000552045 BBXQ8WY36 941 aaPredicted RBP13.98□□□□□ -0.17
LIMA1-210ENST00000552045 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.96□□□□□ -0.17
LIMA1-210ENST00000552045 MIER1Q8N108 512 aa13.95□□□□□ -0.18
LIMA1-210ENST00000552045 NPM1P06748 294 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIMA1-210ENST00000552045 BCANQ96GW7 911 aa13.92□□□□□ -0.18
LIMA1-210ENST00000552045 RGL2O15211 777 aa13.89□□□□□ -0.19
LIMA1-210ENST00000552045 PAXIP1Q6ZW49 1069 aaPredicted RBP13.86□□□□□ -0.19
LIMA1-210ENST00000552045 REM2Q8IYK8 340 aaPredicted RBP13.82□□□□□ -0.2
LIMA1-210ENST00000552045 CFAP44Q96MT7 982 aa13.82□□□□□ -0.2
LIMA1-210ENST00000552045 PLEKHG5O94827 1062 aa13.81□□□□□ -0.2
LIMA1-210ENST00000552045 ZBTB47Q9UFB7 747 aaPredicted RBP13.81□□□□□ -0.2
LIMA1-210ENST00000552045 KDM2AQ9Y2K7 1162 aa13.8□□□□□ -0.2
LIMA1-210ENST00000552045 SPDYE1Q8NFV5 336 aaPredicted RBP13.79□□□□□ -0.2
LIMA1-210ENST00000552045 CIZ1Q9ULV3 898 aaPredicted RBP13.78□□□□□ -0.2
LIMA1-210ENST00000552045 SPRYD3Q8NCJ5 442 aa13.75□□□□□ -0.21
LIMA1-210ENST00000552045 TAOK2Q9UL54 1235 aa13.72□□□□□ -0.21
LIMA1-210ENST00000552045 CHGAP10645 457 aaKnown RBP13.7□□□□□ -0.22
LIMA1-210ENST00000552045 PRKCSHP14314 528 aaPredicted RBP13.69□□□□□ -0.22
LIMA1-210ENST00000552045 TRIM41Q8WV44 630 aa13.69□□□□□ -0.22
LIMA1-210ENST00000552045 CLEC11AQ9Y240 323 aa13.67□□□□□ -0.22
LIMA1-210ENST00000552045 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms