RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 IQCA1Q86XH1 822 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 HERC6Q8IVU3 1022 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 MB21D2Q8IYB1 491 aaPredicted RBP8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 CPXCR1Q8N123 301 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 ANKRD35Q8N283 1001 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 RDH13Q8NBN7 331 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 SDR42E1Q8WUS8 393 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 SLC9A7Q96T83 725 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 PHOX2BQ99453 314 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 SLF1Q9BQI6 1058 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 UBAC1Q9BSL1 405 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 AGXT2Q9BYV1 514 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 FTOQ9C0B1 505 aaKnown RBP eCLIP8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 TPCN1Q9ULQ1 816 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 TMX2Q9Y320 296 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 USP34Q70CQ2 3546 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 MYO5AQ9Y4I1 1855 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 CCDC196A0A1B0GTZ2 297 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 LCHNA4D1U4 455 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 KIF28PB7ZC32 967 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 CPLX1O14810 134 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 IFIT3O14879 490 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 CTAGE5O15320 804 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 PRKAB2O43741 272 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 LPXNO60711 386 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 PFKFB2O60825 505 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 CABYRO75952 493 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 PFKMP08237 780 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 EEF2P13639 858 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 TNFAIP2Q03169 654 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 FUT2Q10981 343 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 TOB2Q14106 344 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 PPP2R5BQ15173 497 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 ME3Q16798 604 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 SKOR2Q2VWA4 1001 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 MSS51Q4VC12 460 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 RRP12Q5JTH9 1297 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 PTCRAQ6ISU1 281 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 MAMDC4Q6UXC1 1216 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 EP400NLQ6ZTU2 488 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 HFE2Q6ZVN8 426 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 TMCO2Q7Z6W1 182 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 METTL3Q86U44 580 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 FAM178BQ8IXR5 827 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 CCDC144CPQ8IYA2 1237 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 REPS2Q8NFH8 660 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 GTF3C6Q969F1 213 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 VWCEQ96DN2 955 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 REPIN1Q9BWE0 567 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 AP5M1Q9H0R1 490 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 ABHD16BQ9H3Z7 469 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 EPB41L4AQ9HCS5 686 aaPredicted RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 GOPCQ9HD26 462 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 ISY1Q9ULR0 285 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 SLC27A5Q9Y2P5 690 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 RIPK3Q9Y572 518 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 DDX49Q9Y6V7 483 aaKnown RBP8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 ASTN1O14525 1302 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 GRIN2DO15399 1336 aa8.19□□□□□ -1.1
DEPDC4-208ENST00000549341 LAMA4Q16363 1823 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 KLF18A0A0U1RQI7 1052 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 B4E1Z4 1266 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 USP17L12C9JPN9 530 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 USP17L21D6R901 530 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 H3BQ06 376 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 H3BQV1 296 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 FOXP2O15409 715 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 DYNC1LI2O43237 492 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 ZEB2O60315 1214 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 NCLP19338 710 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 GJB2P29033 226 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 LIFRP42702 1097 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 KCNJ6P48051 423 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 RCAN1P53805 252 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 EVCP57679 992 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 CTDSPL2Q05D32 466 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 APOBRQ0VD83 1088 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 STK3Q13188 491 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 WTAPQ15007 396 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 FAM47CQ5HY64 1035 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 LARP1BQ659C4 914 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 EEPD1Q7L9B9 569 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 SIAH1Q8IUQ4 282 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 FBXO16Q8IX29 292 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 ZNF444Q8N0Y2 327 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 SLC43A3Q8NBI5 491 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 PPP1R13LQ8WUF5 828 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 TNPO1Q92973 898 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 FGD4Q96M96 766 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 AGBL1Q96MI9 1066 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 TCEANC2Q96MN5 208 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 MKNK2Q9HBH9 465 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 RAVER2Q9HCJ3 691 aaKnown RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 DCP1AQ9NPI6 582 aaPredicted RBP8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 SWAP70Q9UH65 585 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 SLC12A7Q9Y666 1083 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 TNKSO95271 1327 aa8.18□□□□□ -1.1
DEPDC4-208ENST00000549341 SPTBN4Q9H254 2564 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 DNAJC25-GNG10A0A024R161 153 aa8.17□□□□□ -1.1
DEPDC4-208ENST00000549341 CYP2D7A0A087X1C5 515 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms