RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 UPF3BQ9BZI7 483 aaKnown RBP14.9□□□□□ -0.02
SCAF11-208ENST00000546534 RCAN3Q9UKA8 241 aa14.9□□□□□ -0.02
SCAF11-208ENST00000546534 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.89□□□□□ -0.03
SCAF11-208ENST00000546534 RGS20O76081 388 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 HSDL1Q3SXM5 330 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 IER5LQ5T953 404 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 MYSM1Q5VVJ2 828 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 RPAINQ86UA6 219 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 ADGRF4Q8IZF3 695 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 SEPT8Q92599 483 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 MFSD14AQ96MC6 490 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 PHOX2BQ99453 314 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 ZKSCAN3Q9BRR0 538 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 PXMP2Q9NR77 195 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 HELLSQ9NRZ9 838 aa14.89□□□□□ -0.03
SCAF11-208ENST00000546534 MICAL3Q7RTP6 2002 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 DLX2Q07687 328 aaPredicted RBP14.88□□□□□ -0.03
SCAF11-208ENST00000546534 SMAD2Q15796 467 aaKnown RBP14.88□□□□□ -0.03
SCAF11-208ENST00000546534 CLUL1Q15846 466 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 CTC1Q2NKJ3 1217 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 QRICH1Q2TAL8 776 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 CELF3Q5SZQ8 465 aaKnown RBP14.88□□□□□ -0.03
SCAF11-208ENST00000546534 MFSD6Q6ZSS7 791 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 TBC1D10CQ8IV04 446 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 ATP6V0A1Q93050 837 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 FAM227BQ96M60 508 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 SPATA33Q96N06 139 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 C16orf70Q9BSU1 422 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 IFIH1Q9BYX4 1025 aaKnown RBP14.88□□□□□ -0.03
SCAF11-208ENST00000546534 MUTYHQ9UIF7 546 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 MRPL11Q9Y3B7 192 aaKnown RBP14.88□□□□□ -0.03
SCAF11-208ENST00000546534 KIAA1217Q5T5P2 1943 aa14.88□□□□□ -0.03
SCAF11-208ENST00000546534 ZNF318Q5VUA4 2279 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 A0A0D9SFI3 127 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 C17orf102A2RUQ5 167 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 NCK2O43639 380 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 GGPS1O95749 300 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 CFBP00751 764 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 CTSHP09668 335 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 HSPD1P10809 573 aaKnown RBP14.87□□□□□ -0.03
SCAF11-208ENST00000546534 HERC4Q5GLZ8 1057 aaPredicted RBP14.87□□□□□ -0.03
SCAF11-208ENST00000546534 RNF135Q8IUD6 432 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 EVI5LQ96CN4 794 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 SALL3Q9BXA9 1300 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 COL4A6Q14031 1691 aa14.87□□□□□ -0.03
SCAF11-208ENST00000546534 OPLAHO14841 1288 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 GRM6O15303 877 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 TREHO43280 583 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 MBTPS2O43462 519 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 MYCLP12524 364 aaPredicted RBP14.86□□□□□ -0.03
SCAF11-208ENST00000546534 HOXC8P31273 242 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 CTNNB1P35222 781 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 SP2Q02086 613 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 HYAL1Q12794 435 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 MCMDC2Q4G0Z9 681 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 ZNF589Q86UQ0 364 aaPredicted RBP14.86□□□□□ -0.03
SCAF11-208ENST00000546534 DGKHQ86XP1 1220 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 FIBCD1Q8N539 461 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 PNMA1Q8ND90 353 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 PRSS33Q8NF86 280 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 POP1Q99575 1024 aaKnown RBP14.86□□□□□ -0.03
SCAF11-208ENST00000546534 PDCD2LQ9BRP1 358 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 RNPEPQ9H4A4 650 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 JMJD4Q9H9V9 463 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 VAT1LQ9HCJ6 419 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 ZMYM6O95789 1325 aa14.86□□□□□ -0.03
SCAF11-208ENST00000546534 C5orf67F2Z3F1 127 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 H3BRB1 525 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 DHX16O60231 1041 aaKnown RBP14.85□□□□□ -0.03
SCAF11-208ENST00000546534 SMIM10L2AP0DMW4 78 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 SMIM10L2BP0DMW5 78 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 PCP11498 1178 aaKnown RBP14.85□□□□□ -0.03
SCAF11-208ENST00000546534 UBA1P22314 1058 aaKnown RBP14.85□□□□□ -0.03
SCAF11-208ENST00000546534 GTF2F1P35269 517 aaKnown RBP eCLIP14.85□□□□□ -0.03
SCAF11-208ENST00000546534 BMPR1AP36894 532 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 HSD17B4P51659 736 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 KCNV1Q6PIU1 500 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 ESR2Q92731 530 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 EDAQ92838 391 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 IL17RAQ96F46 866 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 TUT1Q9H6E5 874 aaKnown RBP14.85□□□□□ -0.03
SCAF11-208ENST00000546534 NEDD4P46934 1319 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 MYO7AQ13402 2215 aa14.85□□□□□ -0.03
SCAF11-208ENST00000546534 CAND2O75155 1236 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 RB1P06400 928 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 LINC00271P0C7V0 271 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 SMAD4Q13485 552 aaKnown RBP14.84□□□□□ -0.03
SCAF11-208ENST00000546534 ASPRV1Q53RT3 343 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 VSIG10LQ86VR7 867 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 IL31RAQ8NI17 732 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 GPKOWQ92917 476 aaPredicted RBP eCLIP14.84□□□□□ -0.031e-9■■■■□ 23.2
SCAF11-208ENST00000546534 C11orf84Q9BUA3 381 aaPredicted RBP14.84□□□□□ -0.03
SCAF11-208ENST00000546534 LMAN2LQ9H0V9 348 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 RNF41Q9H4P4 317 aaPredicted RBP14.84□□□□□ -0.03
SCAF11-208ENST00000546534 IGFLR1Q9H665 355 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 BCAS3Q9H6U6 928 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 KAT14Q9H8E8 782 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 PCDHB15Q9Y5E8 787 aa14.84□□□□□ -0.03
SCAF11-208ENST00000546534 STXBP3O00186 592 aa14.83□□□□□ -0.04
SCAF11-208ENST00000546534 LINC01565O15544 149 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms