RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CYFIP1Q7L576 1253 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 TLK2Q86UE8 772 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 EMID1Q96A84 441 aaPredicted RBP19.37■□□□□ 0.69
LIG1-204ENST00000542460 ZNF396Q96N95 335 aaPredicted RBP19.37■□□□□ 0.69
LIG1-204ENST00000542460 DEFB118Q96PH6 123 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 RIT2Q99578 217 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 AP5M1Q9H0R1 490 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 SPC25Q9HBM1 224 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 LAD1O00515 517 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 DHX15O43143 795 aaKnown RBP19.36■□□□□ 0.69
LIG1-204ENST00000542460 GJB1P08034 283 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 GJA9P57773 515 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 ARHGAP1Q07960 439 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 PTGDRQ13258 359 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 OR6J1Q8NGC5 347 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 HAS1Q92839 578 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 MTMR9Q96QG7 549 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 UIMC1Q96RL1 719 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 TMEM106CQ9BVX2 250 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 BCAS3Q9H6U6 928 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 XPNPEP3Q9NQH7 507 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 CHMP5Q9NZZ3 219 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 CEP131Q9UPN4 1083 aa19.36■□□□□ 0.69
LIG1-204ENST00000542460 FARP2O94887 1054 aaPredicted RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 BMP15O95972 392 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 SF3A1Q15459 793 aaKnown RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 LRCH2Q5VUJ6 765 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 ATL3Q6DD88 541 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 C4orf32Q8N8J7 132 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 TMEM60Q9H2L4 133 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 JPH1Q9HDC5 661 aaPredicted RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 SLC9A2Q9UBY0 812 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 KIAA1217Q5T5P2 1943 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 TNRC18O15417 2968 aaPredicted RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 SYNRGQ9UMZ2 1314 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 GAS7O60861 476 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 PSMD10O75832 226 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 OR52Z1P0C646 297 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 PTGS1P23219 599 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 NKX3-2P78367 333 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 FOXD4L6Q3SYB3 417 aaPredicted RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 FOXD4L3Q6VB84 417 aaPredicted RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 GJA10Q969M2 543 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 SPATA33Q96N06 139 aa19.35■□□□□ 0.69
LIG1-204ENST00000542460 UPF3AQ9H1J1 476 aaKnown RBP19.35■□□□□ 0.69
LIG1-204ENST00000542460 POTEFA5A3E0 1075 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 SORBS3O60504 671 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 ADAMTS4O75173 837 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 SGPL1O95470 568 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 PGK1P00558 417 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 BRDTQ58F21 947 aaPredicted RBP19.34■□□□□ 0.69
LIG1-204ENST00000542460 PPTC7Q8NI37 304 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 U2AF1L4Q8WU68 220 aaKnown RBP19.34■□□□□ 0.69
LIG1-204ENST00000542460 USP28Q96RU2 1077 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 TEKT3Q9BXF9 490 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 POLR3EQ9NVU0 708 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 TCEAL9Q9UHQ7 104 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 PCDHA12Q9UN75 941 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 CLIC4Q9Y696 253 aa19.34■□□□□ 0.69
LIG1-204ENST00000542460 A6NJR5 290 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 NOP56O00567 594 aaKnown RBP19.33■□□□□ 0.68
LIG1-204ENST00000542460 C6orf222P0C671 652 aaPredicted RBP19.33■□□□□ 0.68
LIG1-204ENST00000542460 CAPN2P17655 700 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 TXKP42681 527 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 CPT1AP50416 773 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 ATP2C1P98194 919 aaPredicted RBP19.33■□□□□ 0.68
LIG1-204ENST00000542460 KRT76Q01546 638 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 CEBPZQ03701 1054 aaKnown RBP19.33■□□□□ 0.68
LIG1-204ENST00000542460 HSDL1Q3SXM5 330 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 RNF180Q86T96 592 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 ARRDC4Q8NCT1 418 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 AFG1LQ8WV93 481 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 FTOQ9C0B1 505 aaKnown RBP eCLIP19.33■□□□□ 0.68
LIG1-204ENST00000542460 TFIP11Q9UBB9 837 aaKnown RBP19.33■□□□□ 0.68
LIG1-204ENST00000542460 CFAP45Q9UL16 551 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 OGDHLQ9ULD0 1010 aa19.33■□□□□ 0.68
LIG1-204ENST00000542460 DDX39AO00148 427 aaKnown RBP19.32■□□□□ 0.68
LIG1-204ENST00000542460 PRPHP41219 470 aa19.32■□□□□ 0.68
LIG1-204ENST00000542460 GJA8P48165 433 aa19.32■□□□□ 0.68
LIG1-204ENST00000542460 DNM1Q05193 864 aaKnown RBP19.32■□□□□ 0.68
LIG1-204ENST00000542460 FSCN1Q16658 493 aaKnown RBP19.32■□□□□ 0.68
LIG1-204ENST00000542460 ZNF746Q6NUN9 644 aaPredicted RBP19.32■□□□□ 0.68
LIG1-204ENST00000542460 CRISPLD2Q9H0B8 497 aa19.32■□□□□ 0.68
LIG1-204ENST00000542460 TTC12Q9H892 705 aaPredicted RBP19.32■□□□□ 0.68
LIG1-204ENST00000542460 CTAGE5O15320 804 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 PPFIA4O75335 1185 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 TFRCP02786 760 aaKnown RBP19.31■□□□□ 0.68
LIG1-204ENST00000542460 CST5P28325 142 aaPredicted RBP19.31■□□□□ 0.68
LIG1-204ENST00000542460 NASPP49321 788 aaPredicted RBP19.31■□□□□ 0.68
LIG1-204ENST00000542460 SP4Q02446 784 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 PTPAQ15257 358 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 GNASQ5JWF2 1037 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 ARL6IP4Q66PJ3 421 aaKnown RBP19.31■□□□□ 0.68
LIG1-204ENST00000542460 KLHDC9Q8NEP7 349 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 SEPT1Q8WYJ6 367 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 GPR20Q99678 358 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 ELP1O95163 1332 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 BRCA2P51587 3418 aa19.31■□□□□ 0.68
LIG1-204ENST00000542460 ZEB2O60315 1214 aa19.3■□□□□ 0.68
LIG1-204ENST00000542460 CCNE2O96020 404 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms