RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 AATFQ9NY61 560 aaKnown RBP eCLIP9.6□□□□□ -0.87
CHD4-208ENST00000540960 HOXC10Q9NYD6 342 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 ZSWIM5Q9P217 1185 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 NID2Q14112 1375 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 RALGAPA2Q2PPJ7 1873 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 NLRC5Q86WI3 1866 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 GOLGA8AA7E2F4 631 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 USP17L12C9JPN9 530 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 USP17L21D6R901 530 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 LARGE1O95461 756 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 POLR3DP05423 398 aaPredicted RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 DEKP35659 375 aaKnown RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 KCNJ6P48051 423 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 ATXN1P54253 815 aaKnown RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 USP14P54578 494 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 SSRP1Q08945 709 aaKnown RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 HYAL1Q12794 435 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 ACVR2BQ13705 512 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 RTN1Q16799 776 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 PTPROQ16827 1216 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 RRP12Q5JTH9 1297 aaKnown RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 CTR9Q6PD62 1173 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 APOA5Q6Q788 366 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 DGKHQ86XP1 1220 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 FOXP4Q8IVH2 680 aaPredicted RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 TEX11Q8IYF3 940 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 ZNF444Q8N0Y2 327 aaPredicted RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 C8orf76Q96K31 380 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 TANGO6Q9C0B7 1094 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 MKNK2Q9HBH9 465 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 SPC25Q9HBM1 224 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 TCP11L1Q9NUJ3 509 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 MCM9Q9NXL9 1143 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 ORC3Q9UBD5 711 aaPredicted RBP9.59□□□□□ -0.87
CHD4-208ENST00000540960 TAF6LQ9Y6J9 622 aa9.59□□□□□ -0.87
CHD4-208ENST00000540960 A0A1W2PRG0 241 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 PRKAB2O43741 272 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 RANBP6O60518 1105 aaKnown RBP9.58□□□□□ -0.88
CHD4-208ENST00000540960 IFNAR1P17181 557 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 ANTXR2P58335 489 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 NKX3-2P78367 333 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 GNL2Q13823 731 aaKnown RBP9.58□□□□□ -0.88
CHD4-208ENST00000540960 PKP1Q13835 747 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 EPC2Q52LR7 807 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 IFIT1BQ5T764 474 aaKnown RBP9.58□□□□□ -0.88
CHD4-208ENST00000540960 C12orf60Q5U649 245 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 MAPKAPK5Q8IW41 473 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 LARP6Q9BRS8 491 aaKnown RBP9.58□□□□□ -0.88
CHD4-208ENST00000540960 LRRC2Q9BYS8 371 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 DHX36Q9H2U1 1008 aaKnown RBP9.58□□□□□ -0.88
CHD4-208ENST00000540960 IGFLR1Q9H665 355 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 LY9Q9HBG7 655 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 BRMS1Q9HCU9 246 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 SWAP70Q9UH65 585 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 CD207Q9UJ71 328 aa9.58□□□□□ -0.88
CHD4-208ENST00000540960 ASH1LQ9NR48 2969 aaKnown RBP9.58□□□□□ -0.88
CHD4-208ENST00000540960 FOCADQ5VW36 1801 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 MYH7P12883 1935 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 DCDC2BA2VCK2 349 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 TSPY2A6NKD2 308 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 H3BNC9 293 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 BAIAP3O94812 1187 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 DEXIO95424 95 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 LMNAP02545 664 aaKnown RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 HLA-DOAP06340 250 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 GUCY1A2P33402 732 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 RFC2P35250 354 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 ZNF445P59923 1031 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 DYNLL1P63167 89 aaKnown RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 CCT2P78371 535 aaKnown RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 CTDSPL2Q05D32 466 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 GPM6BQ13491 265 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 TMEM63BQ5T3F8 832 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 MAMDC4Q6UXC1 1216 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 CYB5R4Q7L1T6 521 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 CRIPAKQ8N1N5 446 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 FANCBQ8NB91 859 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 FBXO18Q8NFZ0 1043 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 CTCFLQ8NI51 663 aaPredicted RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 SDR42E1Q8WUS8 393 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 RPGRIP1Q96KN7 1286 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 SPATA32Q96LK8 384 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 RNF26Q9BY78 433 aaPredicted RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 SAP30BPQ9UHR5 308 aaKnown RBP9.57□□□□□ -0.88
CHD4-208ENST00000540960 SPEGQ15772 3267 aa9.57□□□□□ -0.88
CHD4-208ENST00000540960 NEDD4P46934 1319 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 CABYRO75952 493 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 BMP15O95972 392 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 ADRB1P08588 477 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 ICAM3P32942 547 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 ST3GAL1Q11201 340 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 FSCN1Q16658 493 aaKnown RBP9.56□□□□□ -0.88
CHD4-208ENST00000540960 PTPN21Q16825 1174 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 CCDC183Q5T5S1 534 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 FOXD4L5Q5VV16 416 aaPredicted RBP9.56□□□□□ -0.88
CHD4-208ENST00000540960 CHST3Q7LGC8 479 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 ADGRA1Q86SQ6 560 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 ZNF654Q8IZM8 581 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 TGFBRAP1Q8WUH2 860 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms