RNA–Protein interactions for RNA: ENST00000540812.1

TRIM65-203, Transcript of tripartite motif containing 65, human

TSL 2

Gene TRIM65, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM65-203	ENST00000540812	SMIM10L2B	P0DMW5	78 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	HOXC8	P31273	242 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	ICAM3	P32942	547 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	DBF4B	Q8NFT6	615 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	MAP4K1	Q92918	833 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	ATP6V0A1	Q93050	837 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	INPP4A	Q96PE3	977 aa	Predicted RBP	18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	TUT1	Q9H6E5	874 aa	Known RBP	18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	LY9	Q9HBG7	655 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	RTEL1	Q9NZ71	1219 aa		18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	RBM8A	Q9Y5S9	174 aa	Known RBP	18.77	■□□□□ 0.6
TRIM65-203	ENST00000540812	BRWD1	Q9NSI6	2320 aa		18.77	■□□□□ 0.59
TRIM65-203	ENST00000540812	LINC01553	A4QN01	128 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	RSPH10B2	B2RC85	870 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	SPATA31C2	B4DYI2	1134 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	TREH	O43280	583 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	EFCAB14	O75071	495 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	RSPH10B	P0C881	870 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	MKRN4P	Q13434	485 aa	Predicted RBP	18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	COL9A3	Q14050	684 aa	Predicted RBP	18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	AAK1	Q2M2I8	961 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	GNPTAB	Q3T906	1256 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	USP17L6P	Q6QN14	398 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	CYFIP1	Q7L576	1253 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	ZNF654	Q8IZM8	581 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	OSBPL7	Q9BZF2	842 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	RNPEP	Q9H4A4	650 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	SUGCT	Q9HAC7	445 aa		18.76	■□□□□ 0.59
TRIM65-203	ENST00000540812	NOP56	O00567	594 aa	Known RBP	18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	COL9A1	P20849	921 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	ERVK-21	P61565	698 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	METTL7B	Q6UX53	244 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	TRIM50	Q86XT4	487 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	GPR20	Q99678	358 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	SPZ1	Q9BXG8	430 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	RAPGEFL1	Q9UHV5	662 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	COG5	Q9UP83	839 aa		18.75	■□□□□ 0.59
TRIM65-203	ENST00000540812	EMSY	Q7Z589	1322 aa		18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	STAM2	O75886	525 aa		18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	DDAH1	O94760	285 aa		18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	PLEKHA8P1	O95397	391 aa		18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	NEDD9	Q14511	834 aa		18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	PLEKHG4	Q58EX7	1191 aa		18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	RRP36	Q96EU6	259 aa	Known RBP	18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	TGS1	Q96RS0	853 aa	Known RBP	18.74	■□□□□ 0.59
TRIM65-203	ENST00000540812	DOCK5	Q9H7D0	1870 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	MEIS2	O14770	477 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	FIBP	O43427	364 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	CTSH	P09668	335 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	UTP14C	Q5TAP6	766 aa	Known RBP	18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	MYOCD	Q8IZQ8	938 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	SRBD1	Q8N5C6	995 aa	Known RBP	18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	CTCFL	Q8NI51	663 aa	Predicted RBP	18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	SMARCC2	Q8TAQ2	1214 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	HLA-C	Q95604	372 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	MAP3K14	Q99558	947 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	USP26	Q9BXU7	913 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	SETD4	Q9NVD3	440 aa		18.73	■□□□□ 0.59
TRIM65-203	ENST00000540812	PIK3CD	O00329	1044 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	PRC1	O43663	620 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	AMH	P03971	560 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	RXRA	P19793	462 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	SP4	Q02446	784 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	CASC1	Q6TDU7	716 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	CMTR1	Q8N1G2	835 aa	Known RBP	18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	CUL5	Q93034	780 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	C17orf80	Q9BSJ5	609 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	LMCD1	Q9NZU5	365 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	MICAL3	Q7RTP6	2002 aa		18.72	■□□□□ 0.59
TRIM65-203	ENST00000540812	SH2B2	O14492	632 aa	Predicted RBP	18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	KIF5B	P33176	963 aa		18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	PCNX4	Q63HM2	1172 aa		18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	RAB11FIP4	Q86YS3	637 aa		18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	SEPT8	Q92599	483 aa		18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	LSG1	Q9H089	658 aa	Known RBP	18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	SEC63	Q9UGP8	760 aa	Known RBP	18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	INSL6	Q9Y581	213 aa		18.71	■□□□□ 0.59
TRIM65-203	ENST00000540812	hCG_1642624	A0A1W2PR95	340 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	SMARCA1	P28370	1054 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	HTRA4	P83105	476 aa	Predicted RBP	18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	NFXL1	Q6ZNB6	911 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	SP7	Q8TDD2	431 aa	Predicted RBP	18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	LMBR1	Q8WVP7	490 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	SENP7	Q9BQF6	1050 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	LZTS2	Q9BRK4	669 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	SI	P14410	1827 aa		18.7	■□□□□ 0.58
TRIM65-203	ENST00000540812	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	ATP9A	O75110	1047 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	CAND2	O75155	1236 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	GNAT1	P11488	350 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	MCM5	P33992	734 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	GNAQ	P50148	359 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	ADAM17	P78536	824 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	ARHGAP4	P98171	946 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	XRRA1	Q6P2D8	792 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	FBXO22	Q8NEZ5	403 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	MTA3	Q9BTC8	594 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	LRRC2	Q9BYS8	371 aa		18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	ZNF215	Q9UL58	517 aa	Predicted RBP	18.69	■□□□□ 0.58
TRIM65-203	ENST00000540812	CCDC69	A6NI79	296 aa		18.68	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms