RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 CDC42EP5Q6NZY7 148 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 LRRC55Q6ZSA7 311 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 SNX29Q8TEQ0 813 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 DNAJC18Q9H819 358 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 SERPINB13Q9UIV8 391 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 PNMA6FA0A0J9YX94 578 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 FAM196BA6NMK8 535 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 PDIA5Q14554 519 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 VWA3BQ502W6 1294 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 TTMPQ5BVD1 217 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 PAPD7Q5XG87 772 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 APOBEC3HQ6NTF7 200 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 DNAJC19Q96DA6 116 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 PURBQ96QR8 312 aaKnown RBP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 NDST4Q9H3R1 872 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 NDUFAB1O14561 156 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 ONECUT3O60422 494 aaPredicted RBP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 RASSF7Q02833 373 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 ORC2Q13416 577 aaPredicted RBP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 ZNF662Q6ZS27 426 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 PROM2Q8N271 834 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 RETREG2Q8NC44 543 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 RUFY1Q96T51 708 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 NUP58Q9BVL2 599 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 NLRC4Q9NPP4 1024 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 STK17AQ9UEE5 414 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 NFU1Q9UMS0 254 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 PVALEFA0A1B0GWK0 134 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 RPS6KA5O75582 802 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 SSBP05455 408 aaKnown RBP eCLIP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 HPDP32754 393 aaPredicted RBP13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 CACNB3P54284 484 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 CREG2Q8IUH2 290 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 SP8Q8IXZ3 490 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 SPATA4Q8NEY3 305 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 GOLPH3Q9H4A6 298 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 LRRC37AA6NMS7 1700 aa13.88□□□□□ -0.19
SFSWAP-208ENST00000539506 A0A1W2PQJ5 194 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L15C9J2P7 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L13C9JLJ4 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L11C9JVI0 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L18D6R9N7 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L22D6RA61 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L17D6RBQ6 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L19D6RCP7 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L20D6RJB6 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 hCG_1984214I3L0E3 225 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 AKR1B10O60218 316 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 CYLC1P35663 651 aaPredicted RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 AARSP49588 968 aaKnown RBP eCLIP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 CARSP49589 748 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 KRT83P78385 493 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 GFPT1Q06210 699 aaPredicted RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L24Q0WX57 530 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 SPA17Q15506 151 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 FIGNQ5HY92 759 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 PPP4R3AQ6IN85 833 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 USP17L6PQ6QN14 398 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 FAM114A1Q8IWE2 563 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 ZNF713Q8N859 430 aaPredicted RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 CCDC47Q96A33 483 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 P2RX7Q99572 595 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 IFIH1Q9BYX4 1025 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 RBM12Q9NTZ6 932 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 DDX25Q9UHL0 483 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 PLAGL2Q9UPG8 496 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 ATP6V0A2Q9Y487 856 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 MYH10P35580 1976 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 EIF4A3P38919 411 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 RRAGAQ7L523 313 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 GUF1Q8N442 669 aaKnown RBP13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 COA1Q9GZY4 146 aa13.87□□□□□ -0.19
SFSWAP-208ENST00000539506 A0A087WUV0 522 aaPredicted RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 NPHP3-ACAD11A0A0J9YXS1 232 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 FTCDO95954 541 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 GUCY2CP25092 1073 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 HNRNPH1P31943 449 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 INPP5BP32019 993 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 EFCAB13Q8IY85 973 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 CCDC170Q8IYT3 715 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 MTMR8Q96EF0 704 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 CDK5RAP3Q96JB5 506 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 CCDC43Q96MW1 224 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 TANGO6Q9C0B7 1094 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 ATF5Q9Y2D1 282 aaPredicted RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 MYH7BA7E2Y1 1941 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 MPHOSPH10O00566 681 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 HNRNPH3P31942 346 aaKnown RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 CACNB1Q02641 598 aaPredicted RBP13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 KCNMA1Q12791 1236 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 TMEM266Q2M3C6 531 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 BAP1Q92560 729 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 ZIM3Q96PE6 472 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 TBC1D7Q9P0N9 293 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 E9PMD0 336 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 ZBTB5O15062 677 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 CDK17Q00537 523 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 GUCY2DQ02846 1103 aa13.86□□□□□ -0.19
SFSWAP-208ENST00000539506 ZCWPW2Q504Y3 356 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms