RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PARNO95453 639 aaKnown RBP13.24□□□□□ -0.29
RTN3-209ENST00000538995 LGALS2P05162 132 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 ACRP10323 421 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 SCG2P13521 617 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 ITGB5P18084 799 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 ADD1P35611 737 aaKnown RBP13.24□□□□□ -0.29
RTN3-209ENST00000538995 CHMP4BP1P59074 171 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 MTMR1Q13613 665 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 MCTP2Q6DN12 878 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 CYFIP1Q7L576 1253 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 CCDC12Q8WUD4 166 aaPredicted RBP13.24□□□□□ -0.29
RTN3-209ENST00000538995 CTAGE1Q96RT6 745 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 GPR20Q99678 358 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 HDAC6Q9UBN7 1215 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 STXBP5LQ9Y2K9 1186 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 CYP46A1Q9Y6A2 500 aa13.24□□□□□ -0.29
RTN3-209ENST00000538995 SMCO2A6NFE2 343 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 H3BRB1 525 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 PRPF3O43395 683 aaKnown RBP13.23□□□□□ -0.29
RTN3-209ENST00000538995 SORBS3O60504 671 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 IQCF3P0C7M6 154 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 KCNA2P16389 499 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 IFNAR1P17181 557 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 DNAJB2P25686 324 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 HOXC8P31273 242 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 SREBF1P36956 1147 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 CLK2P49760 499 aaKnown RBP13.23□□□□□ -0.29
RTN3-209ENST00000538995 PTK7Q13308 1070 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 PPP1R13LQ8WUF5 828 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 VWCEQ96DN2 955 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 SCLYQ96I15 445 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 ALG1Q9BT22 464 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 RNF26Q9BY78 433 aaPredicted RBP13.23□□□□□ -0.29
RTN3-209ENST00000538995 ANO3Q9BYT9 981 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 TUT1Q9H6E5 874 aaKnown RBP13.23□□□□□ -0.29
RTN3-209ENST00000538995 JADE2Q9NQC1 790 aa13.23□□□□□ -0.29
RTN3-209ENST00000538995 ZNF215Q9UL58 517 aaPredicted RBP13.23□□□□□ -0.29
RTN3-209ENST00000538995 ACTN1P12814 892 aa13.22□□□□□ -0.29
RTN3-209ENST00000538995 SELPP16109 830 aa13.22□□□□□ -0.29
RTN3-209ENST00000538995 PDIA3P30101 505 aaKnown RBP13.22□□□□□ -0.29
RTN3-209ENST00000538995 AKAP17AQ02040 695 aaKnown RBP13.22□□□□□ -0.29
RTN3-209ENST00000538995 TOB2Q14106 344 aaPredicted RBP13.22□□□□□ -0.29
RTN3-209ENST00000538995 NTRK3Q16288 839 aa13.22□□□□□ -0.29
RTN3-209ENST00000538995 DHX38Q92620 1227 aaKnown RBP13.22□□□□□ -0.29
RTN3-209ENST00000538995 GUCD1Q96NT3 240 aa13.22□□□□□ -0.29
RTN3-209ENST00000538995 ZMYND12Q9H0C1 365 aa13.22□□□□□ -0.29
RTN3-209ENST00000538995 TANC1Q9C0D5 1861 aa13.22□□□□□ -0.29
RTN3-209ENST00000538995 COL6A3P12111 3177 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 C17orf102A2RUQ5 167 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 GNAT1P11488 350 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 GNA11P29992 359 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 ANAPC15P60006 121 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 RAB30Q15771 203 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 PKN1Q16512 942 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 CEP55Q53EZ4 464 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 LRRC8DQ7L1W4 858 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 NIPA1Q7RTP0 329 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 OTOP2Q7RTS6 562 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 SERINC5Q86VE9 423 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 CCDC148Q8NFR7 591 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 ZNF274Q96GC6 653 aaPredicted RBP13.21□□□□□ -0.29
RTN3-209ENST00000538995 MXRA8Q9BRK3 442 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 TTYH1Q9H313 450 aaPredicted RBP13.21□□□□□ -0.29
RTN3-209ENST00000538995 SEMA6BQ9H3T3 888 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 BCAS3Q9H6U6 928 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 C6orf50Q9HD87 102 aa13.21□□□□□ -0.29
RTN3-209ENST00000538995 CXXC1Q9P0U4 656 aaPredicted RBP13.21□□□□□ -0.29
RTN3-209ENST00000538995 NFASCO94856 1347 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 ATP9AO75110 1047 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 CAND2O75155 1236 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 BAIAP3O94812 1187 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 SMIM10L2AP0DMW4 78 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 SMIM10L2BP0DMW5 78 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 CKBP12277 381 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 ARHGAP4P98171 946 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 TRIM71Q2Q1W2 868 aaKnown RBP13.2□□□□□ -0.3
RTN3-209ENST00000538995 DEFB128Q7Z7B8 93 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 TRIM22Q8IYM9 498 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 FAM177A1Q8N128 213 aaPredicted RBP13.2□□□□□ -0.3
RTN3-209ENST00000538995 REXO1Q8N1G1 1221 aaKnown RBP13.2□□□□□ -0.3
RTN3-209ENST00000538995 BICD2Q8TD16 824 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 SEPT1Q8WYJ6 367 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 PHKBQ93100 1093 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 TIFAQ96CG3 184 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 PBX4Q9BYU1 374 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 UPF3BQ9BZI7 483 aaKnown RBP13.2□□□□□ -0.3
RTN3-209ENST00000538995 JPH1Q9HDC5 661 aaPredicted RBP13.2□□□□□ -0.3
RTN3-209ENST00000538995 SH3GLB2Q9NR46 395 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 KCNH7Q9NS40 1196 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 SLC4A7Q9Y6M7 1214 aa13.2□□□□□ -0.3
RTN3-209ENST00000538995 EMSYQ7Z589 1322 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 ZBBXA8MT70 800 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 MEIS1O00470 390 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 CXCL10P02778 98 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 CYP3A4P08684 503 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 TCF7P36402 384 aaPredicted RBP13.19□□□□□ -0.3
RTN3-209ENST00000538995 SP4Q02446 784 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 CPLX2Q6PUV4 134 aaKnown RBP13.19□□□□□ -0.3
RTN3-209ENST00000538995 TRIM50Q86XT4 487 aa13.19□□□□□ -0.3
RTN3-209ENST00000538995 PHOSPHO2Q8TCD6 241 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms