RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 CYFIP1Q7L576 1253 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 NLRX1Q86UT6 975 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 ARNTL2Q8WYA1 636 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 ATP6V0A1Q93050 837 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 CERS4Q9HA82 394 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 RTEL1Q9NZ71 1219 aa16.03■□□□□ 0.16
SYNE1-235ENST00000537033 SMIM10L2AP0DMW4 78 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 SMIM10L2BP0DMW5 78 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 GNAT1P11488 350 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 RXRAP19793 462 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 ZNF200P98182 395 aaPredicted RBP16.02■□□□□ 0.16
SYNE1-235ENST00000537033 SKIV2LQ15477 1246 aaKnown RBP16.02■□□□□ 0.16
SYNE1-235ENST00000537033 TRIM71Q2Q1W2 868 aaKnown RBP16.02■□□□□ 0.16
SYNE1-235ENST00000537033 SYNE3Q6ZMZ3 975 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 SERINC5Q86VE9 423 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 GIMAP8Q8ND71 665 aaPredicted RBP16.02■□□□□ 0.16
SYNE1-235ENST00000537033 PSTPIP2Q9H939 334 aa16.02■□□□□ 0.16
SYNE1-235ENST00000537033 RSPH10B2B2RC85 870 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 LGR5O75473 907 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 RSPH10BP0C881 870 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 DEFB103AP81534 67 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 SP4Q02446 784 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 GPNMBQ14956 572 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 NECTIN1Q15223 517 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 BMP2KLQ5H9B9 411 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 MICU3Q86XE3 530 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 CMTR1Q8N1G2 835 aaKnown RBP16.01■□□□□ 0.15
SYNE1-235ENST00000537033 SRBD1Q8N5C6 995 aaKnown RBP16.01■□□□□ 0.15
SYNE1-235ENST00000537033 WNT8BQ93098 351 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 CDHR1Q96JP9 859 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 ASB2Q96Q27 587 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 GPR20Q99678 358 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 SENP7Q9BQF6 1050 aa16.01■□□□□ 0.15
SYNE1-235ENST00000537033 SPDYE3A6NKU9 549 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 MEIS2O14770 477 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 CAND2O75155 1236 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 AAK1Q2M2I8 961 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 CENPQQ7L2Z9 268 aaPredicted RBP16■□□□□ 0.15
SYNE1-235ENST00000537033 FANCBQ8NB91 859 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 GPRASP2Q96D09 838 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 EHMT1Q9H9B1 1298 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 MICAL3Q7RTP6 2002 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 KAT6AQ92794 2004 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 CHD7Q9P2D1 2997 aa16■□□□□ 0.15
SYNE1-235ENST00000537033 SIP14410 1827 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 VCANP13611 3396 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 TNFRSF10AO00220 468 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 RFXAPO00287 272 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 GJB5O95377 273 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 AMHP03971 560 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 POU3F3P20264 500 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-235ENST00000537033 HOXC8P31273 242 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 SEMA3FQ13275 785 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 HIC1Q14526 733 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 MBTPS1Q14703 1052 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 UTP14CQ5TAP6 766 aaKnown RBP15.99■□□□□ 0.15
SYNE1-235ENST00000537033 TRAF7Q6Q0C0 670 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 TMTC3Q6ZXV5 915 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 HEATR3Q7Z4Q2 680 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 TMCO2Q7Z6W1 182 aaPredicted RBP15.99■□□□□ 0.15
SYNE1-235ENST00000537033 SGMS1Q86VZ5 419 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 RAB11FIP4Q86YS3 637 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 CCDC82Q8N4S0 544 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 RAD9AQ99638 391 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 LRRC2Q9BYS8 371 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 BCAS3Q9H6U6 928 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 MTCH2Q9Y6C9 303 aa15.99■□□□□ 0.15
SYNE1-235ENST00000537033 EPOPA6NHQ4 379 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 TREHO43280 583 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 ARHGEF15O94989 841 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 MTMR1Q13613 665 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 TRIM50Q86XT4 487 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 ADAMTS19Q8TE59 1207 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 SEPT8Q92599 483 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 NEK1Q96PY6 1258 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 RNPEPQ9H4A4 650 aa15.98■□□□□ 0.15
SYNE1-235ENST00000537033 RBM28Q9NW13 759 aaKnown RBP15.98■□□□□ 0.15
SYNE1-235ENST00000537033 hCG_1642624A0A1W2PR95 340 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 LCHNA4D1U4 455 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 CTSHP09668 335 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 ARHGAP4P98171 946 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 UBE2SQ16763 222 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 TCTN1Q2MV58 587 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 FAM117BQ6P1L5 589 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 DBF4BQ8NFT6 615 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 TGS1Q96RS0 853 aaKnown RBP15.97■□□□□ 0.15
SYNE1-235ENST00000537033 SETD4Q9NVD3 440 aa15.97■□□□□ 0.15
SYNE1-235ENST00000537033 NRCAMQ92823 1304 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 TRANK1O15050 2925 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 TCF7P36402 384 aaPredicted RBP15.96■□□□□ 0.15
SYNE1-235ENST00000537033 GRB10Q13322 594 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 KRT32Q14532 448 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 RTN1Q16799 776 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 PLEKHG4Q58EX7 1191 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 PPP1R18Q6NYC8 613 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 APOA5Q6Q788 366 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 MYOCDQ8IZQ8 938 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 LMBR1Q8WVP7 490 aa15.96■□□□□ 0.15
SYNE1-235ENST00000537033 UHRF1Q96T88 793 aaPredicted RBP15.96■□□□□ 0.15
SYNE1-235ENST00000537033 PKD2L1Q9P0L9 805 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms