RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	SEC23A	Q15436	765 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	KIAA0753	Q2KHM9	967 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	CELF3	Q5SZQ8	465 aa	Known RBP	13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	KRT40	Q6A162	431 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	STAG2	Q8N3U4	1231 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	POM121	Q96HA1	1249 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	NECAB3	Q96P71	396 aa	Predicted RBP	13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	UBAC1	Q9BSL1	405 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	ZBED2	Q9BTP6	218 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	VAT1L	Q9HCJ6	419 aa		13.41	□□□□□ -0.26
CTNND1-238	ENST00000534647	EMSY	Q7Z589	1322 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	LCHN	A4D1U4	455 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	DHX16	O60231	1041 aa	Known RBP	13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	PPP1R11	O60927	126 aa	Predicted RBP	13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	HOXC8	P31273	242 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	DEFB103A	P81534	67 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	MBTPS1	Q14703	1052 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	TCTN1	Q2MV58	587 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	IFIT1B	Q5T764	474 aa	Known RBP	13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	ZNF618	Q5T7W0	954 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	SERINC5	Q86VE9	423 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	TGS1	Q96RS0	853 aa	Known RBP	13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	C16orf70	Q9BSU1	422 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	ALG1	Q9BT22	464 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	RIOX1	Q9H6W3	641 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	SUGCT	Q9HAC7	445 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	PLSCR2	Q9NRY7	297 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	MAD2L2	Q9UI95	211 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	PCDHA1	Q9Y5I3	950 aa		13.4	□□□□□ -0.26
CTNND1-238	ENST00000534647	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	LINC01553	A4QN01	128 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	LGR5	O75473	907 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	IGHD	P01880	384 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	SP2	Q02086	613 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	PGM5	Q15124	567 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	HSDL1	Q3SXM5	330 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	SPRED2	Q7Z698	418 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	SPATA33	Q96N06	139 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	INSL6	Q9Y581	213 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	KIAA1217	Q5T5P2	1943 aa		13.39	□□□□□ -0.27
CTNND1-238	ENST00000534647	TRIP12	Q14669	1992 aa	Predicted RBP	13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	CAND2	O75155	1236 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	STAM2	O75886	525 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	ZNF286B	P0CG31	522 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	HTRA4	P83105	476 aa	Predicted RBP	13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	HIC1	Q14526	733 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	SP7	Q8TDD2	431 aa	Predicted RBP	13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	WNT8B	Q93098	351 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	LAMA4	Q16363	1823 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	REV3L	O60673	3130 aa		13.38	□□□□□ -0.27
CTNND1-238	ENST00000534647	RSPH10B2	B2RC85	870 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	GGPS1	O95749	300 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	RSPH10B	P0C881	870 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	POLR2M	P0CAP2	368 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	MYCL	P12524	364 aa	Predicted RBP	13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	UBA1	P22314	1058 aa	Known RBP	13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	CCND2	P30279	289 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	ICAM3	P32942	547 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	PLA2G5	P39877	138 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	ZNF200	P98182	395 aa	Predicted RBP	13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	SLC35G1	Q2M3R5	365 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	PLEKHG4	Q58EX7	1191 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	CYB5R4	Q7L1T6	521 aa		13.37	□□□□□ -0.27
CTNND1-238	ENST00000534647	PNMA6F	A0A0J9YX94	578 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	C17orf102	A2RUQ5	167 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647		H3BRB1	525 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	AMH	P03971	560 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	HOXA13	P31271	388 aa	Predicted RBP	13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	GRM4	Q14833	912 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	DBF4B	Q8NFT6	615 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	IL31RA	Q8NI17	732 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	GDPD5	Q8WTR4	605 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	SAMD11	Q96NU1	681 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	INPP4A	Q96PE3	977 aa	Predicted RBP	13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	USP26	Q9BXU7	913 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	EPHX3	Q9H6B9	360 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	TUT1	Q9H6E5	874 aa	Known RBP	13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	MLXIP	Q9HAP2	919 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	RAPGEFL1	Q9UHV5	662 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	FRMPD4	Q14CM0	1322 aa		13.36	□□□□□ -0.27
CTNND1-238	ENST00000534647	PTPRS	Q13332	1948 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	XIRP2	A4UGR9	3374 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	TCF20	Q9UGU0	1960 aa	Known RBP	13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	SPATA31C2	B4DYI2	1134 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	GPR37L1	O60883	481 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	THPO	P40225	353 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	TROAP	Q12815	778 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	TRDN	Q13061	729 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	NEDD9	Q14511	834 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	GNPTAB	Q3T906	1256 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	LEXM	Q3ZCV2	418 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	ATP6V0A1	Q93050	837 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	TOP1MT	Q969P6	601 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	PIGS	Q96S52	555 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	LRFN3	Q9BTN0	628 aa		13.35	□□□□□ -0.27
CTNND1-238	ENST00000534647	IL25	Q9H293	177 aa		13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms