RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 H3BRB1 525 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 SP4Q02446 784 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 PTK7Q13308 1070 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 RAB30Q15771 203 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 TYW1BQ6NUM6 668 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 LRRC8DQ7L1W4 858 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 FBXL16Q8N461 479 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 DHX38Q92620 1227 aaKnown RBP15.25■□□□□ 0.03
VPS28-211ENST00000530790 CTAGE1Q96RT6 745 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 CDX2Q99626 313 aaPredicted RBP15.25■□□□□ 0.03
VPS28-211ENST00000530790 GPR20Q99678 358 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 USP26Q9BXU7 913 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 FTOQ9C0B1 505 aaKnown RBP eCLIP15.25■□□□□ 0.031e-6■■□□□ 11.8
VPS28-211ENST00000530790 GLT8D2Q9H1C3 349 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 TUT1Q9H6E5 874 aaKnown RBP15.25■□□□□ 0.03
VPS28-211ENST00000530790 ZNF215Q9UL58 517 aaPredicted RBP15.25■□□□□ 0.03
VPS28-211ENST00000530790 SLC4A7Q9Y6M7 1214 aa15.25■□□□□ 0.03
VPS28-211ENST00000530790 FOSP01100 380 aaPredicted RBP15.24■□□□□ 0.03
VPS28-211ENST00000530790 CENPBP07199 599 aaPredicted RBP15.24■□□□□ 0.03
VPS28-211ENST00000530790 SELPP16109 830 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 ITGB5P18084 799 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 ADD1P35611 737 aaKnown RBP15.24■□□□□ 0.03
VPS28-211ENST00000530790 PBX2P40425 430 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 RBL2Q08999 1139 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 AP3B2Q13367 1082 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 PFKFB3Q16875 520 aaPredicted RBP15.24■□□□□ 0.03
VPS28-211ENST00000530790 VWCEQ96DN2 955 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 ANO3Q9BYT9 981 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 AGXT2Q9BYV1 514 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 BCAS3Q9H6U6 928 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 MSRAQ9UJ68 235 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 UBIAD1Q9Y5Z9 338 aa15.24■□□□□ 0.03
VPS28-211ENST00000530790 C17orf102A2RUQ5 167 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 SMCO2A6NFE2 343 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 PARNO95453 639 aaKnown RBP15.23■□□□□ 0.03
VPS28-211ENST00000530790 SMIM10L2AP0DMW4 78 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 SMIM10L2BP0DMW5 78 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 CKBP12277 381 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 SCG2P13521 617 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 FOSL2P15408 326 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 KCNA2P16389 499 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 RUFY3Q7L099 469 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 TRIM50Q86XT4 487 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 CCDC12Q8WUD4 166 aaPredicted RBP15.23■□□□□ 0.03
VPS28-211ENST00000530790 MYLIPQ8WY64 445 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 PGBD1Q96JS3 809 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 ZNF576Q9H609 170 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 JADE2Q9NQC1 790 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 PKD2L1Q9P0L9 805 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 MYH7BA7E2Y1 1941 aa15.23■□□□□ 0.03
VPS28-211ENST00000530790 MAFGO15525 162 aa15.22■□□□□ 0.03
VPS28-211ENST00000530790 BAIAP3O94812 1187 aa15.22■□□□□ 0.03
VPS28-211ENST00000530790 ATP2A2P16615 1042 aaKnown RBP15.22■□□□□ 0.03
VPS28-211ENST00000530790 ZNF200P98182 395 aaPredicted RBP15.22■□□□□ 0.03
VPS28-211ENST00000530790 AKAP17AQ02040 695 aaKnown RBP15.22■□□□□ 0.03
VPS28-211ENST00000530790 UTP14CQ5TAP6 766 aaKnown RBP15.22■□□□□ 0.03
VPS28-211ENST00000530790 SLC17A8Q8NDX2 589 aa15.22■□□□□ 0.03
VPS28-211ENST00000530790 ATP6V0A1Q93050 837 aa15.22■□□□□ 0.03
VPS28-211ENST00000530790 CYP46A1Q9Y6A2 500 aa15.22■□□□□ 0.03
VPS28-211ENST00000530790 SCN5AQ14524 2016 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 ESYT2A0FGR8 921 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 ATP9AO75110 1047 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 GNAT1P11488 350 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 HOXC8P31273 242 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 TCF7P36402 384 aaPredicted RBP15.21■□□□□ 0.03
VPS28-211ENST00000530790 SREBF1P36956 1147 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 TRIM71Q2Q1W2 868 aaKnown RBP15.21■□□□□ 0.03
VPS28-211ENST00000530790 SERINC5Q86VE9 423 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 PHKBQ93100 1093 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 SLC9A7Q96T83 725 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 MXRA8Q9BRK3 442 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 SLC28A3Q9HAS3 691 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 ZSWIM6Q9HCJ5 1215 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 TMEM260Q9NX78 707 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 CDH23Q9H251 3354 aa15.21■□□□□ 0.03
VPS28-211ENST00000530790 PRPF3O43395 683 aaKnown RBP15.2■□□□□ 0.02
VPS28-211ENST00000530790 THPOP40225 353 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 KCNJ6P48051 423 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 CLK2P49760 499 aaKnown RBP15.2■□□□□ 0.02
VPS28-211ENST00000530790 EVCP57679 992 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 HIC1Q14526 733 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 GRIN2CQ14957 1233 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 CEP55Q53EZ4 464 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 ZNF618Q5T7W0 954 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 CCDC148Q8NFR7 591 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 SEPT1Q8WYJ6 367 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 WNT8BQ93098 351 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 SDF4Q9BRK5 362 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 SLC26A6Q9BXS9 759 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 RNF26Q9BY78 433 aaPredicted RBP15.2■□□□□ 0.02
VPS28-211ENST00000530790 UPF3BQ9BZI7 483 aaKnown RBP15.2■□□□□ 0.02
VPS28-211ENST00000530790 TM6SF1Q9BZW5 370 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 ZMYND12Q9H0C1 365 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 NKX2-4Q9H2Z4 354 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 C6orf50Q9HD87 102 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 JPH1Q9HDC5 661 aaPredicted RBP15.2■□□□□ 0.02
VPS28-211ENST00000530790 KCNH7Q9NS40 1196 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 YBX2Q9Y2T7 364 aaKnown RBP15.2■□□□□ 0.02
VPS28-211ENST00000530790 TELO2Q9Y4R8 837 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 PCDHA11Q9Y5I1 949 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms