RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SETQ01105 290 aaPredicted RBP15.89■□□□□ 0.13
USF1-209ENST00000529476 ARHGAP1Q07960 439 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 PKP1Q13835 747 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 Q4G0T1 1027 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 CELF3Q5SZQ8 465 aaKnown RBP15.89■□□□□ 0.13
USF1-209ENST00000529476 PPP4R3AQ6IN85 833 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 DHX37Q8IY37 1157 aaKnown RBP15.89■□□□□ 0.13
USF1-209ENST00000529476 NAP1L4Q99733 375 aaKnown RBP15.89■□□□□ 0.13
USF1-209ENST00000529476 SENP7Q9BQF6 1050 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 AP5M1Q9H0R1 490 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 NOL7Q9UMY1 257 aaKnown RBP15.89■□□□□ 0.13
USF1-209ENST00000529476 NR2E3Q9Y5X4 410 aa15.89■□□□□ 0.13
USF1-209ENST00000529476 A0A1W2PPC1 479 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 MSH4O15457 936 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 TOB1P50616 345 aaPredicted RBP15.88■□□□□ 0.13
USF1-209ENST00000529476 BEX3Q00994 111 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 RESTQ13127 1097 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 ITGB3BPQ13352 177 aaPredicted RBP15.88■□□□□ 0.13
USF1-209ENST00000529476 NEDD9Q14511 834 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 NBR1Q14596 966 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 LRRC41Q15345 812 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 FOXD4L5Q5VV16 416 aaPredicted RBP15.88■□□□□ 0.13
USF1-209ENST00000529476 MYSM1Q5VVJ2 828 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 CYFIP1Q7L576 1253 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 FOXD4L4Q8WXT5 416 aaPredicted RBP15.88■□□□□ 0.13
USF1-209ENST00000529476 GJA10Q969M2 543 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 ZNF577Q9BSK1 485 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 MLXIPQ9HAP2 919 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 TELO2Q9Y4R8 837 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 LAMA3Q16787 3333 aa15.88■□□□□ 0.13
USF1-209ENST00000529476 IPO5O00410 1097 aaKnown RBP15.87■□□□□ 0.13
USF1-209ENST00000529476 FARP2O94887 1054 aaPredicted RBP15.87■□□□□ 0.13
USF1-209ENST00000529476 MCM7P33993 719 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 TRAPPC10P48553 1259 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 SP4Q02446 784 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 LAMC2Q13753 1193 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 ZNF174Q15697 407 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 FSCN1Q16658 493 aaKnown RBP15.87■□□□□ 0.13
USF1-209ENST00000529476 TTC38Q5R3I4 469 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 BRAPQ7Z569 592 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 POTEDQ86YR6 584 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 ARRDC4Q8NCT1 418 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 KLHDC9Q8NEP7 349 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 AFG1LQ8WV93 481 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 EMID1Q96A84 441 aaPredicted RBP15.87■□□□□ 0.13
USF1-209ENST00000529476 SPC25Q9HBM1 224 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 MYH15Q9Y2K3 1946 aa15.87■□□□□ 0.13
USF1-209ENST00000529476 DDX39AO00148 427 aaKnown RBP15.86■□□□□ 0.13
USF1-209ENST00000529476 DHX15O43143 795 aaKnown RBP15.86■□□□□ 0.13
USF1-209ENST00000529476 NKX3-2P78367 333 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 GNASQ5JWF2 1037 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 METTL7BQ6UX53 244 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 RNF180Q86T96 592 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 GIMAP8Q8ND71 665 aaPredicted RBP15.86■□□□□ 0.13
USF1-209ENST00000529476 ETNPPLQ8TBG4 499 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 SLC5A5Q92911 643 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 SPATA33Q96N06 139 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 SDF4Q9BRK5 362 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 DAXXQ9UER7 740 aaPredicted RBP15.86■□□□□ 0.13
USF1-209ENST00000529476 PCDHB6Q9Y5E3 794 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 NFASCO94856 1347 aa15.86■□□□□ 0.13
USF1-209ENST00000529476 A6NJR5 290 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 NEMFO60524 1076 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 MMP3P08254 477 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 ZSCAN22P10073 491 aaPredicted RBP15.85■□□□□ 0.13
USF1-209ENST00000529476 CST5P28325 142 aaPredicted RBP15.85■□□□□ 0.13
USF1-209ENST00000529476 CPT1AP50416 773 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 KCNA10Q16322 511 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 HSDL1Q3SXM5 330 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 RILPL1Q5EBL4 403 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 CCSAPQ6IQ19 270 aaPredicted RBP15.85■□□□□ 0.13
USF1-209ENST00000529476 FAM173BQ6P4H8 233 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 PPTC7Q8NI37 304 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 DIS3LQ8TF46 1054 aaKnown RBP15.85■□□□□ 0.13
USF1-209ENST00000529476 COL25A1Q9BXS0 654 aaPredicted RBP15.85■□□□□ 0.13
USF1-209ENST00000529476 JPH1Q9HDC5 661 aaPredicted RBP15.85■□□□□ 0.13
USF1-209ENST00000529476 KCNMB3Q9NPA1 279 aa15.85■□□□□ 0.13
USF1-209ENST00000529476 KBTBD13C9JR72 458 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 DNM1LO00429 736 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 PDIA4P13667 645 aaKnown RBP15.84■□□□□ 0.13
USF1-209ENST00000529476 CALCRLQ16602 461 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 LRCH2Q5VUJ6 765 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 Q7L0L9 218 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 HAS1Q92839 578 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 RIT2Q99578 217 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 GPR20Q99678 358 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 TMEM60Q9H2L4 133 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 ZSCAN16Q9H4T2 348 aaPredicted RBP15.84■□□□□ 0.13
USF1-209ENST00000529476 TBC1D22BQ9NU19 505 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 SLC9A2Q9UBY0 812 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 ZDHHC9Q9Y397 364 aa15.84■□□□□ 0.13
USF1-209ENST00000529476 NOP56O00567 594 aaKnown RBP15.83■□□□□ 0.12
USF1-209ENST00000529476 TBX3O15119 743 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 MARCH6O60337 910 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 GAS7O60861 476 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 PSMD10O75832 226 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 CCNE2O96020 404 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 F13A1P00488 732 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 ASGR1P07306 291 aa15.83■□□□□ 0.12
USF1-209ENST00000529476 MYL3P08590 195 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms