RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 NCKAP1LP55160 1127 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 TM4SF20Q53R12 229 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 OLFML2BQ68BL8 750 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 TMEM132EQ6IEE7 984 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 UHMK1Q8TAS1 419 aaKnown RBP6.84□□□□□ -1.31
CD44-230ENST00000528922 KCNN1Q92952 543 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 CELF4Q9BZC1 486 aaKnown RBP6.84□□□□□ -1.31
CD44-230ENST00000528922 INTS7Q9NVH2 962 aaKnown RBP6.84□□□□□ -1.31
CD44-230ENST00000528922 ZNF652Q9Y2D9 606 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 SYNJ2O15056 1496 aa6.84□□□□□ -1.31
CD44-230ENST00000528922 KRIT1O00522 736 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 SLC27A2O14975 620 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 KRT1P04264 644 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 PMLP29590 882 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 EPHB3P54753 998 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 JAM2P57087 298 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 ST5P78524 1137 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 CHRNA2Q15822 529 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 FAM47CQ5HY64 1035 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 ZNF648Q5T619 568 aaPredicted RBP6.83□□□□□ -1.32
CD44-230ENST00000528922 ZCCHC8Q6NZY4 707 aaKnown RBP6.83□□□□□ -1.32
CD44-230ENST00000528922 ARHGAP36Q6ZRI8 547 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 SYDE1Q6ZW31 735 aaPredicted RBP6.83□□□□□ -1.32
CD44-230ENST00000528922 OVCH1Q7RTY7 1134 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 LRRTM3Q86VH5 581 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 ARRDC4Q8NCT1 418 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 ALG3Q92685 438 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 MFSD3Q96ES6 412 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 FAM84AQ96KN4 292 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 MYOTQ9UBF9 498 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 DSEQ9UL01 958 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 TELO2Q9Y4R8 837 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 PCDHB4Q9Y5E5 795 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 PCDHA5Q9Y5H7 936 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 ATAD2BQ9ULI0 1458 aa6.83□□□□□ -1.32
CD44-230ENST00000528922 ZNF561-AS1K7EIQ3 104 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 ETV2O00321 342 aaPredicted RBP6.82□□□□□ -1.32
CD44-230ENST00000528922 GSTA4O15217 222 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 SEMA7AO75326 666 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 FARP2O94887 1054 aaPredicted RBP6.82□□□□□ -1.32
CD44-230ENST00000528922 LTFP02788 710 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 ASGR2P07307 311 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 JMJD7P0C870 316 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 DLG4P78352 724 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 LACTBP83111 547 aaPredicted RBP6.82□□□□□ -1.32
CD44-230ENST00000528922 GPR19Q15760 415 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 CYP4F22Q6NT55 531 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 CNNM4Q6P4Q7 775 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 CISD2Q8N5K1 135 aaKnown RBP6.82□□□□□ -1.32
CD44-230ENST00000528922 POU5F2Q8N7G0 328 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 CLEC4DQ8WXI8 215 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 DDX1Q92499 740 aaKnown RBP6.82□□□□□ -1.32
CD44-230ENST00000528922 CD244Q9BZW8 370 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 MTFR1LQ9H019 292 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 SMURF1Q9HCE7 757 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 SAMD15Q9P1V8 674 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 ASH2LQ9UBL3 628 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 ERICH3Q5RHP9 1530 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 VPS8Q8N3P4 1428 aa6.82□□□□□ -1.32
CD44-230ENST00000528922 A0A087X0B3 334 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.81□□□□□ -1.32
CD44-230ENST00000528922 B4E1Z4 1266 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 GLRX3O76003 335 aaKnown RBP6.81□□□□□ -1.32
CD44-230ENST00000528922 NPTXRO95502 500 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 APPP05067 770 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 ATF2P15336 505 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 KRT15P19012 456 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 TUSC3Q13454 348 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 CRY1Q16526 586 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 TMEM177Q53S58 311 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 CDCA2Q69YH5 1023 aaPredicted RBP6.81□□□□□ -1.32
CD44-230ENST00000528922 ZNF662Q6ZS27 426 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 DDX53Q86TM3 631 aaKnown RBP6.81□□□□□ -1.32
CD44-230ENST00000528922 PTRH1Q86Y79 214 aaKnown RBP6.81□□□□□ -1.32
CD44-230ENST00000528922 MIB1Q86YT6 1006 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 IGDCC3Q8IVU1 814 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 PHOSPHO1Q8TCT1 267 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 MZB1Q8WU39 189 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 TARS2Q9BW92 718 aaKnown RBP6.81□□□□□ -1.32
CD44-230ENST00000528922 CLIP1P30622 1438 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 KIF13AQ9H1H9 1805 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 SBNO2Q9Y2G9 1366 aa6.81□□□□□ -1.32
CD44-230ENST00000528922 M0R2C6 588 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 MAN2B1O00754 1011 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 KCNK3O14649 394 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 N4BP3O15049 544 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 MAFKO60675 156 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 CLSTN1O94985 981 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 MYCLP1P12525 358 aaPredicted RBP6.8□□□□□ -1.32
CD44-230ENST00000528922 MC3RP41968 323 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 CFAP100Q494V2 611 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 PIK3R6Q5UE93 754 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 AMIGO3Q86WK7 504 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 KRTAP9-2Q9BYQ4 174 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 SLKQ9H2G2 1235 aaPredicted RBP6.8□□□□□ -1.32
CD44-230ENST00000528922 SOGA1O94964 1423 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 KDM6BO15054 1643 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 TOP2BQ02880 1626 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 BIVM-ERCC5R4GMW8 1640 aa6.8□□□□□ -1.32
CD44-230ENST00000528922 GSG1L2A8MUP6 293 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms