RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ATP6V0A1Q93050 837 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 C17orf80Q9BSJ5 609 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 FRMPD4Q14CM0 1322 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 PNMA6FA0A0J9YX94 578 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 TREHO43280 583 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 AMHP03971 560 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 PDE4AP27815 886 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 PTH1RQ03431 593 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 TROAPQ12815 778 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 MYOCDQ8IZQ8 938 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 OSBPL7Q9BZF2 842 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 RNPEPQ9H4A4 650 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 TAF6LQ9Y6J9 622 aa27.29■■□□□ 1.96
CPSF1-202ENST00000527827 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP27.28■■□□□ 1.96
CPSF1-202ENST00000527827 ICAM3P32942 547 aa27.28■■□□□ 1.96
CPSF1-202ENST00000527827 SEMA3FQ13275 785 aa27.28■■□□□ 1.96
CPSF1-202ENST00000527827 SP7Q8TDD2 431 aaPredicted RBP27.28■■□□□ 1.96
CPSF1-202ENST00000527827 KHSRPQ92945 711 aaKnown RBP eCLIP27.28■■□□□ 1.96
CPSF1-202ENST00000527827 INPP4AQ96PE3 977 aaPredicted RBP27.28■■□□□ 1.96
CPSF1-202ENST00000527827 UBE2ZQ9H832 354 aaPredicted RBP27.28■■□□□ 1.96
CPSF1-202ENST00000527827 PLA2G5P39877 138 aa27.27■■□□□ 1.96
CPSF1-202ENST00000527827 TTC22Q5TAA0 569 aa27.27■■□□□ 1.96
CPSF1-202ENST00000527827 FBXO22Q8NEZ5 403 aa27.27■■□□□ 1.96
CPSF1-202ENST00000527827 LRFN3Q9BTN0 628 aa27.27■■□□□ 1.96
CPSF1-202ENST00000527827 U3KPZ7 1027 aaPredicted RBP27.27■■□□□ 1.96
CPSF1-202ENST00000527827 SPATA31C2B4DYI2 1134 aa27.26■■□□□ 1.95
CPSF1-202ENST00000527827 WTAPQ15007 396 aa27.26■■□□□ 1.95
CPSF1-202ENST00000527827 GNPTABQ3T906 1256 aa27.26■■□□□ 1.95
CPSF1-202ENST00000527827 USP26Q9BXU7 913 aa27.26■■□□□ 1.95
CPSF1-202ENST00000527827 CD320Q9NPF0 282 aa27.26■■□□□ 1.95
CPSF1-202ENST00000527827 ERICH2A1L162 156 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 NOP56O00567 594 aaKnown RBP27.25■■□□□ 1.95
CPSF1-202ENST00000527827 STAM2O75886 525 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 NEDD9Q14511 834 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 METTL7BQ6UX53 244 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 CYFIP1Q7L576 1253 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 GPR20Q99678 358 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 RTEL1Q9NZ71 1219 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 TELO2Q9Y4R8 837 aa27.25■■□□□ 1.95
CPSF1-202ENST00000527827 E7EWF7 191 aa27.24■■□□□ 1.95
CPSF1-202ENST00000527827 CAND2O75155 1236 aa27.24■■□□□ 1.95
CPSF1-202ENST00000527827 SEPT8Q92599 483 aa27.24■■□□□ 1.95
CPSF1-202ENST00000527827 SETD4Q9NVD3 440 aa27.24■■□□□ 1.95
CPSF1-202ENST00000527827 NLRC5Q86WI3 1866 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 FIBPO43427 364 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 CTSHP09668 335 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 CHMLP26374 656 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 ANTXR2P58335 489 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 LEXMQ3ZCV2 418 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 RALYLQ86SE5 291 aaKnown RBP27.23■■□□□ 1.95
CPSF1-202ENST00000527827 TRIM50Q86XT4 487 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 NCOA7Q8NI08 942 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 PIBF1Q8WXW3 757 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 TOP1MTQ969P6 601 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 FAM122AQ96E09 287 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 KAT6AQ92794 2004 aa27.23■■□□□ 1.95
CPSF1-202ENST00000527827 COL4A6Q14031 1691 aa27.22■■□□□ 1.95
CPSF1-202ENST00000527827 LOC101059915A0A1B0GWI6 518 aaPredicted RBP27.22■■□□□ 1.95
CPSF1-202ENST00000527827 ADAM17P78536 824 aa27.22■■□□□ 1.95
CPSF1-202ENST00000527827 EPC2Q52LR7 807 aa27.22■■□□□ 1.95
CPSF1-202ENST00000527827 IGDCC4Q8TDY8 1250 aa27.22■■□□□ 1.95
CPSF1-202ENST00000527827 RUFY2Q8WXA3 655 aa27.22■■□□□ 1.95
CPSF1-202ENST00000527827 C11orf16Q9NQ32 467 aa27.22■■□□□ 1.95
CPSF1-202ENST00000527827 KCNA5P22460 613 aa27.21■■□□□ 1.95
CPSF1-202ENST00000527827 SART3Q15020 963 aaKnown RBP27.21■■□□□ 1.95
CPSF1-202ENST00000527827 TMEM31Q5JXX7 168 aa27.21■■□□□ 1.95
CPSF1-202ENST00000527827 CATIPQ7Z7H3 387 aa27.21■■□□□ 1.95
CPSF1-202ENST00000527827 GADD45GIP1Q8TAE8 222 aaPredicted RBP27.21■■□□□ 1.95
CPSF1-202ENST00000527827 MRPL38Q96DV4 380 aaKnown RBP27.21■■□□□ 1.95
CPSF1-202ENST00000527827 SAMD11Q96NU1 681 aa27.21■■□□□ 1.95
CPSF1-202ENST00000527827 GNAT1P11488 350 aa27.2■■□□□ 1.94
CPSF1-202ENST00000527827 UTP14CQ5TAP6 766 aaKnown RBP27.2■■□□□ 1.94
CPSF1-202ENST00000527827 USP17L6PQ6QN14 398 aa27.2■■□□□ 1.94
CPSF1-202ENST00000527827 YME1L1Q96TA2 773 aa27.2■■□□□ 1.94
CPSF1-202ENST00000527827 RALGAPA2Q2PPJ7 1873 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 UPP2O95045 317 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 FAM26DQ5JW98 314 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 PCNX4Q63HM2 1172 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 MB21D2Q8IYB1 491 aaPredicted RBP27.19■■□□□ 1.94
CPSF1-202ENST00000527827 LMBR1Q8WVP7 490 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 YTHDC1Q96MU7 727 aaKnown RBP27.19■■□□□ 1.94
CPSF1-202ENST00000527827 SENP7Q9BQF6 1050 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 SPZ1Q9BXG8 430 aa27.19■■□□□ 1.94
CPSF1-202ENST00000527827 ZNF215Q9UL58 517 aaPredicted RBP27.19■■□□□ 1.94
CPSF1-202ENST00000527827 H3BNC9 293 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 MEIS2O14770 477 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 SGSM2O43147 1006 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 GPR37L1O60883 481 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 ARHGAP4P98171 946 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 FAM178BQ8IXR5 827 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 SMARCC2Q8TAQ2 1214 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 MAP3K14Q99558 947 aa27.18■■□□□ 1.94
CPSF1-202ENST00000527827 PI4K2BG5E9Z4 385 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 PIK3CDO00329 1044 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 IL9P15248 144 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 SP4Q02446 784 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 GPM6BQ13491 265 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 PTPROQ16827 1216 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 XRRA1Q6P2D8 792 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 TMEM192Q8IY95 271 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms