RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRIML1Q8N9V2 468 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 LRRC15Q8TF66 581 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 HHIPL1Q96JK4 782 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 GSDMAQ96QA5 445 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 PORCNQ9H237 461 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 EFCC1Q9HA90 598 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 TBC1D22BQ9NU19 505 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 PKD2L1Q9P0L9 805 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 MAN1B1Q9UKM7 699 aa23.58■■□□□ 1.36
VPS28-208ENST00000527797 SOWAHBA6NEL2 793 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 EML1O00423 815 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 MED24O75448 989 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 RPA1P27694 616 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 DEKP35659 375 aaKnown RBP23.57■■□□□ 1.36
VPS28-208ENST00000527797 GNPTABQ3T906 1256 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 ISM2Q6H9L7 571 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 SV2BQ7L1I2 683 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 RAD54LQ92698 747 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 CDHR1Q96JP9 859 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 MPHOSPH6Q99547 160 aaKnown RBP23.57■■□□□ 1.36
VPS28-208ENST00000527797 NAT10Q9H0A0 1025 aaKnown RBP23.57■■□□□ 1.36
VPS28-208ENST00000527797 BLZF1Q9H2G9 400 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 BLOC1S4Q9NUP1 217 aa23.57■■□□□ 1.36
VPS28-208ENST00000527797 IGF2BP3O00425 579 aaKnown RBP eCLIP23.56■■□□□ 1.36
VPS28-208ENST00000527797 CHMP2AO43633 222 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 EIF3JO75822 258 aaKnown RBP23.56■■□□□ 1.36
VPS28-208ENST00000527797 CASP1P29466 404 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 ZNF165P49910 485 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 CUL4BQ13620 913 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 ECM1Q16610 540 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 CATSPER3Q86XQ3 398 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 LARP4BQ92615 738 aaKnown RBP23.56■■□□□ 1.36
VPS28-208ENST00000527797 EIF2AK1Q9BQI3 630 aaKnown RBP23.56■■□□□ 1.36
VPS28-208ENST00000527797 POLR3CQ9BUI4 534 aaPredicted RBP23.56■■□□□ 1.36
VPS28-208ENST00000527797 UNC45AQ9H3U1 944 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 KIAA1024Q9UPX6 916 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 ASTN1O14525 1302 aa23.56■■□□□ 1.36
VPS28-208ENST00000527797 FAM155AB1AL88 458 aaPredicted RBP23.55■■□□□ 1.36
VPS28-208ENST00000527797 DHX15O43143 795 aaKnown RBP23.55■■□□□ 1.36
VPS28-208ENST00000527797 PGK2P07205 417 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 XRCC6P12956 609 aaKnown RBP eCLIP23.55■■□□□ 1.367e-6■□□□□ 8.8
VPS28-208ENST00000527797 ITGB3BPQ13352 177 aaPredicted RBP23.55■■□□□ 1.36
VPS28-208ENST00000527797 FAM110CQ1W6H9 321 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 DPCR1Q3MIW9 517 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 B3GNT9Q6UX72 402 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 C11orf57Q6ZUT1 292 aaPredicted RBP23.55■■□□□ 1.36
VPS28-208ENST00000527797 LRRC27Q9C0I9 530 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 DNAJC25-GNG10A0A024R161 153 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 POTEB3A0JP26 581 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 PDE4DQ08499 809 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 FSTL1Q12841 308 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 MORC3Q14149 939 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 MCM6Q14566 821 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 EPHA7Q15375 998 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 UVSSAQ2YD98 709 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 POTEBQ6S5H4 581 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 CBX8Q9HC52 389 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 TUFT1Q9NNX1 390 aa23.55■■□□□ 1.36
VPS28-208ENST00000527797 DDX39AO00148 427 aaKnown RBP23.54■■□□□ 1.36
VPS28-208ENST00000527797 RGS20O76081 388 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 SPATA31C1P0DKV0 1188 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 EDNRBP24530 442 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 SREBF2Q12772 1141 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 DHX8Q14562 1220 aaKnown RBP23.54■■□□□ 1.36
VPS28-208ENST00000527797 TAF1CQ15572 869 aaPredicted RBP23.54■■□□□ 1.36
VPS28-208ENST00000527797 KCNK18Q7Z418 384 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 IFNL1Q8IU54 200 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 KCTD17Q8N5Z5 321 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 HSD17B14Q9BPX1 270 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 C7orf25Q9BPX7 421 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 RMND1Q9NWS8 449 aa23.54■■□□□ 1.36
VPS28-208ENST00000527797 STRNO43815 780 aa23.53■■□□□ 1.36
VPS28-208ENST00000527797 ATP9AO75110 1047 aa23.53■■□□□ 1.36
VPS28-208ENST00000527797 MIER3Q7Z3K6 550 aa23.53■■□□□ 1.36
VPS28-208ENST00000527797 TCEAL9Q9UHQ7 104 aa23.53■■□□□ 1.36
VPS28-208ENST00000527797 IVNS1ABPQ9Y6Y0 642 aa23.53■■□□□ 1.36
VPS28-208ENST00000527797 SPATA31C2B4DYI2 1134 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 RPN1P04843 607 aaKnown RBP23.52■■□□□ 1.36
VPS28-208ENST00000527797 MUTP22033 750 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 SEMA3FQ13275 785 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 ABRAQ8N0Z2 381 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 NEK9Q8TD19 979 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 TRIM9Q9C026 710 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 DNM3Q9UQ16 869 aa23.52■■□□□ 1.36
VPS28-208ENST00000527797 LOC102724159A0A0B4J2E5 919 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 POTEFA5A3E0 1075 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 E9PMD0 336 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 ICAM3P32942 547 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 KRT76Q01546 638 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 CYP4A11Q02928 519 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 PWP2Q15269 919 aaKnown RBP23.51■■□□□ 1.35
VPS28-208ENST00000527797 POTEGQ6S5H5 508 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 PAXIP1Q6ZW49 1069 aaPredicted RBP23.51■■□□□ 1.35
VPS28-208ENST00000527797 MLKLQ8NB16 471 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 DYDC2Q96IM9 177 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 RGL1Q9NZL6 768 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 CPA4Q9UI42 421 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 SLITRK3O94933 977 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 BMP6P22004 513 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 MAPK4P31152 587 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms