RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 ASXL2Q76L83 1435 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 NKRFO15226 690 aaKnown RBP eCLIP3.67□□□□□ -1.82
CD44-216ENST00000525293 ADCY3O60266 1144 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 DIAPH1O60610 1272 aaKnown RBP3.67□□□□□ -1.82
CD44-216ENST00000525293 SOD2P04179 222 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 GNAT1P11488 350 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 GRK2P25098 689 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 CNR2P34972 360 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 GRK3P35626 688 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 GPR85P60893 370 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 PLP2Q04941 152 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 SSRP1Q08945 709 aaKnown RBP3.67□□□□□ -1.82
CD44-216ENST00000525293 SPIRE1Q08AE8 756 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 KIZQ2M2Z5 673 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 SKOR2Q2VWA4 1001 aaPredicted RBP3.67□□□□□ -1.82
CD44-216ENST00000525293 FAM209AQ5JX71 171 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 PRR31Q5SQ13 230 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 ZFYVE27Q5T4F4 411 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 NBPF6Q5VWK0 638 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 PRAMEF18Q5VWM3 479 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 FOXB2Q5VYV0 432 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 ERICH6BQ5W0A0 696 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 STYK1Q6J9G0 422 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 OTOP3Q7RTS5 596 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 TRIM48Q8IWZ4 208 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 TXNDC5Q8NBS9 432 aaKnown RBP3.67□□□□□ -1.82
CD44-216ENST00000525293 NBPF4Q96M43 638 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 CDC6Q99741 560 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 ZFYVE21Q9BQ24 234 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 HIRIP3Q9BW71 556 aaPredicted RBP3.67□□□□□ -1.82
CD44-216ENST00000525293 LNPKQ9C0E8 428 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 SIRPGQ9P1W8 387 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 RBPJLQ9UBG7 517 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 CROTQ9UKG9 612 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 WASF3Q9UPY6 502 aa3.67□□□□□ -1.82
CD44-216ENST00000525293 TRBV23-1A0A0A0MS06 115 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 FAM47E-STBD1D6RA91 191 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 LTFP02788 710 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 FAM153BP0C7A2 387 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 IL13P35225 146 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 TUSC3Q13454 348 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 CYP4F22Q6NT55 531 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 TMC5Q6UXY8 1006 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 DPH6Q7L8W6 267 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 ZBTB38Q8NAP3 1195 aaPredicted RBP3.66□□□□□ -1.82
CD44-216ENST00000525293 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.66□□□□□ -1.82
CD44-216ENST00000525293 CLIC6Q96NY7 704 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 IPO9Q96P70 1041 aaKnown RBP3.66□□□□□ -1.82
CD44-216ENST00000525293 ALG1Q9BT22 464 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 IPPKQ9H8X2 491 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 KDM2BQ8NHM5 1336 aa3.66□□□□□ -1.82
CD44-216ENST00000525293 FAM221BA6H8Z2 402 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 MROH6A6NGR9 719 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 MLLT6P55198 1093 aaPredicted RBP3.65□□□□□ -1.83
CD44-216ENST00000525293 RBL2Q08999 1139 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 KIAA2012Q0VF49 1180 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 PAN2Q504Q3 1202 aaKnown RBP3.65□□□□□ -1.83
CD44-216ENST00000525293 FAM26FQ5R3K3 315 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 PHF19Q5T6S3 580 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 PRRT2Q7Z6L0 340 aaPredicted RBP3.65□□□□□ -1.83
CD44-216ENST00000525293 MTDHQ86UE4 582 aaKnown RBP3.65□□□□□ -1.83
CD44-216ENST00000525293 TTLL11Q8NHH1 800 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 UHMK1Q8TAS1 419 aaKnown RBP3.65□□□□□ -1.83
CD44-216ENST00000525293 PTPRN2Q92932 1015 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 DHRS4Q9BTZ2 278 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 L2HGDHQ9H9P8 463 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 DSEQ9UL01 958 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 TELO2Q9Y4R8 837 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 NUB1Q9Y5A7 615 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 PCDHA8Q9Y5H6 950 aa3.65□□□□□ -1.83
CD44-216ENST00000525293 AQP7O14520 342 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 CYP7B1O75881 506 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 CYP1A1P04798 512 aaPredicted RBP3.64□□□□□ -1.83
CD44-216ENST00000525293 FAHP16930 419 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 ZNF28P17035 718 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 SUMO1P63165 101 aaKnown RBP3.64□□□□□ -1.83
CD44-216ENST00000525293 GUCY1A3Q02108 690 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 PAK1Q13153 545 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 SERINC3Q13530 473 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 HABP4Q5JVS0 413 aaKnown RBP3.64□□□□□ -1.83
CD44-216ENST00000525293 VASNQ6EMK4 673 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 KCTD1Q719H9 257 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 MAMDC2Q7Z304 686 aaPredicted RBP3.64□□□□□ -1.83
CD44-216ENST00000525293 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.64□□□□□ -1.83
CD44-216ENST00000525293 FAM124AQ86V42 546 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 PROSER1Q86XN7 944 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 PMFBP1Q8TBY8 1022 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 SH3RF2Q8TEC5 729 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 ARMC5Q96C12 935 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 LCORQ96JN0 433 aaPredicted RBP3.64□□□□□ -1.83
CD44-216ENST00000525293 EXOC2Q96KP1 924 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 DEPDC7Q96QD5 511 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 TMEM209Q96SK2 561 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 HSPBP1Q9NZL4 362 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 PCDHA9Q9Y5H5 950 aa3.64□□□□□ -1.83
CD44-216ENST00000525293 TCRBV5S4A2TA0A5A2 114 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 K7ESM1 405 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 ACOT7O00154 380 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 CKMP06732 381 aa3.63□□□□□ -1.83
CD44-216ENST00000525293 C6orf222P0C671 652 aaPredicted RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms