RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PCDHA6Q9UN73 950 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 PCDHA8Q9Y5H6 950 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 SIPA1L1O43166 1804 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 UMODL1Q5DID0 1318 aa8.9□□□□□ -0.98
LIMCH1-219ENST00000514096 C5orf42Q9H799 3197 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC194A0A1B0GVG4 234 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 GOLGA6L22H0YM25 854 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 GNAQP50148 359 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 CYP4A11Q02928 519 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 TTLL4Q14679 1199 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 BRDTQ58F21 947 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 Q7L0L9 218 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 MCF2L2Q86YR7 1114 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 OXER1Q8TDS5 423 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 MYH4Q9Y623 1939 aa8.9□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC196A0A1B0GTZ2 297 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 ATP9AO75110 1047 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 PCP11498 1178 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 ACLYP53396 1101 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 ICE2Q659A1 982 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 FAM173BQ6P4H8 233 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 RASSF8Q8NHQ8 419 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 BADQ92934 168 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 TNPO1Q92973 898 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 MPHOSPH6Q99547 160 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 RBM28Q9NW13 759 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 SYNRGQ9UMZ2 1314 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 TMEM150BA6NC51 233 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 GRXCR1A8MXD5 290 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 GNRH1P01148 92 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 CYBAP13498 195 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 SCG2P13521 617 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 CA8P35219 290 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 MRPL12P52815 198 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 LHX8Q68G74 356 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 REXO1Q8N1G1 1221 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 FAM133AQ8N9E0 248 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 LRCH3Q96II8 777 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 PDCD2LQ9BRP1 358 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 YY1AP1Q9H869 796 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 TCP11L1Q9NUJ3 509 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 SSBP05455 408 aaKnown RBP eCLIP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 PIAS4Q8N2W9 510 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 PXMP2Q9NR77 195 aa8.89□□□□□ -0.99
LIMCH1-219ENST00000514096 ATAD5Q96QE3 1844 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 ZNF865P0CJ78 1059 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 MCM7P33993 719 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 PRMT2P55345 433 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 EXOSC10Q01780 885 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 NFX1Q12986 1120 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 PLA2G4DQ86XP0 818 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 C7orf31Q8N865 590 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 SETD4Q9NVD3 440 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 PFASO15067 1338 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 XIRP2A4UGR9 3374 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 A0A1W2PQ45 241 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 A0A1W2PQY0 241 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 DCDC2CA8MYV0 355 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 BTBD18B2RXH4 712 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 DDAH1O94760 285 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 FGRP09769 529 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 MYBP10242 640 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 ARP10275 920 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 CDC25AP30304 524 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 CDR1P51861 262 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 SP2Q02086 613 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 RAD51AP2Q09MP3 1159 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 MTMR1Q13613 665 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 NLRX1Q86UT6 975 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 CEP120Q8N960 986 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 SCFD2Q8WU76 684 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC43Q96MW1 224 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 C6orf50Q9HD87 102 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 OPLAHO14841 1288 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 ST18O60284 1047 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 CCNT1O60563 726 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 NEBLO76041 1014 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 XRCC5P13010 732 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 CSF2RAP15509 400 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 LIFRP42702 1097 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 IRF5Q13568 498 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 PGM5Q15124 567 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 SKIV2LQ15477 1246 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 KIAA0753Q2KHM9 967 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 ARMC3Q5W041 872 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 ANO3Q9BYT9 981 aa8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 FEZ2Q9UHY8 353 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-219ENST00000514096 TDP2O95551 362 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 ITGA7Q13683 1181 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 ZNF174Q15697 407 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 SHCBP1Q8NEM2 672 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 TBCKQ8TEA7 893 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 CHAMP1Q96JM3 812 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 FAM217BQ9NTX9 383 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 STK24Q9Y6E0 443 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 PRRC2BQ5JSZ5 2229 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 CCND2P30279 289 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 HMGN5P82970 282 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 CCDC173Q0VFZ6 552 aa8.87□□□□□ -0.99
LIMCH1-219ENST00000514096 GNPTABQ3T906 1256 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms