RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MYO7AQ13402 2215 aa23.67■■□□□ 1.38
SQSTM1-215ENST00000514093 C5orf42Q9H799 3197 aa23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 H3BRB1 525 aa23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 PDE1AP54750 535 aa23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 IQCA1Q86XH1 822 aa23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 KCNH6Q9H252 994 aa23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 TUT1Q9H6E5 874 aaKnown RBP23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 ZBTB47Q9UFB7 747 aaPredicted RBP23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 MUTYHQ9UIF7 546 aa23.66■■□□□ 1.38
SQSTM1-215ENST00000514093 ZNF213O14771 459 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 PARP1P09874 1014 aaKnown RBP23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 CTNNB1P35222 781 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 PGM5Q15124 567 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 KCNV1Q6PIU1 500 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 VSIG10LQ86VR7 867 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 ZSCAN10Q96SZ4 725 aaPredicted RBP23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 AMNQ9BXJ7 453 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 UPF3BQ9BZI7 483 aaKnown RBP23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 MYH6P13533 1939 aa23.65■■□□□ 1.38
SQSTM1-215ENST00000514093 NLRC5Q86WI3 1866 aa23.64■■□□□ 1.38
SQSTM1-215ENST00000514093 B4E1Z4 1266 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 PPP1R11O60927 126 aaPredicted RBP23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 LGALS2P05162 132 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 HOXC8P31273 242 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 GTF2F1P35269 517 aaKnown RBP eCLIP23.64■■□□□ 1.379e-8■■■■■ 28.6
SQSTM1-215ENST00000514093 HYAL1Q12794 435 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 STOX1Q6ZVD7 989 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 STAG2Q8N3U4 1231 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 FIBCD1Q8N539 461 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 ENAHQ8N8S7 591 aaPredicted RBP23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 IL17RAQ96F46 866 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 PHOX2BQ99453 314 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 IGFLR1Q9H665 355 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 SETD4Q9NVD3 440 aa23.64■■□□□ 1.37
SQSTM1-215ENST00000514093 TRIM6-TRIM34B2RNG4 842 aa23.63■■□□□ 1.37
SQSTM1-215ENST00000514093 GRM6O15303 877 aa23.63■■□□□ 1.37
SQSTM1-215ENST00000514093 SMAD2Q15796 467 aaKnown RBP23.63■■□□□ 1.37
SQSTM1-215ENST00000514093 CTC1Q2NKJ3 1217 aa23.63■■□□□ 1.37
SQSTM1-215ENST00000514093 MBTPS2O43462 519 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 CCDC178Q5BJE1 867 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 RNF135Q8IUD6 432 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 RILPL2Q969X0 211 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 MFSD14AQ96MC6 490 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 ZSWIM5Q9P217 1185 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 SUPT16HQ9Y5B9 1047 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 PCDHA1Q9Y5I3 950 aa23.62■■□□□ 1.37
SQSTM1-215ENST00000514093 TRIOO75962 3097 aa23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 LINC01565O15544 149 aa23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 LINC00271P0C7V0 271 aa23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 BMPR1AP36894 532 aa23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 GHRHRQ02643 423 aa23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 DIEXFQ68CQ4 756 aaKnown RBP23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 FCHSD1Q86WN1 690 aa23.61■■□□□ 1.37
SQSTM1-215ENST00000514093 NCK2O43639 380 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 CAND2O75155 1236 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 TGFB3P10600 412 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 CCND2P30279 289 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 TRIM50Q86XT4 487 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 APBB2Q92870 758 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 TELO2Q9Y4R8 837 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 ATG2AQ2TAZ0 1938 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 COL4A6Q14031 1691 aa23.6■■□□□ 1.37
SQSTM1-215ENST00000514093 ZNF318Q5VUA4 2279 aa23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 C5orf67F2Z3F1 127 aa23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 NOP56O00567 594 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 TBX10O75333 385 aa23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 RB1P06400 928 aa23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 HERC4Q5GLZ8 1057 aaPredicted RBP23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 POP1Q99575 1024 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 C11orf84Q9BUA3 381 aaPredicted RBP23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 RALGAPA2Q2PPJ7 1873 aa23.59■■□□□ 1.37
SQSTM1-215ENST00000514093 KLRF2D3W0D1 207 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 STXBP3O00186 592 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 ZBTB5O15062 677 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 ARHGAP4P98171 946 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 IER5LQ5T953 404 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 UTP14CQ5TAP6 766 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 CYFIP1Q7L576 1253 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 HOMER1Q86YM7 354 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 PRSS33Q8NF86 280 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 LMAN2LQ9H0V9 348 aa23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 ALG13Q9NP73 1137 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 MAP3K20Q9NYL2 800 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-215ENST00000514093 GCOM1H8Y6P7 765 aaPredicted RBP23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 CHRNA1P02708 482 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 POLR2MP0CAP2 368 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 GHRP10912 638 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 GNAT1P11488 350 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 SDSP20132 328 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 FAM26DQ5JW98 314 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 EDAQ92838 391 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 MTMR8Q96EF0 704 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 GPR20Q99678 358 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 USP26Q9BXU7 913 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 RTEL1Q9NZ71 1219 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 ADGRA3Q8IWK6 1321 aa23.57■■□□□ 1.36
SQSTM1-215ENST00000514093 MFAP1P55081 439 aaKnown RBP23.56■■□□□ 1.36
SQSTM1-215ENST00000514093 SP4Q02446 784 aa23.56■■□□□ 1.36
SQSTM1-215ENST00000514093 SMAD4Q13485 552 aaKnown RBP23.56■■□□□ 1.36
SQSTM1-215ENST00000514093 LMBR1Q8WVP7 490 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms