RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TMEM199Q8N511 208 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 MTG1Q9BT17 334 aaPredicted RBP9.26□□□□□ -0.93
SCN1A-207ENST00000507401 TAF6LQ9Y6J9 622 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 DDX49Q9Y6V7 483 aaKnown RBP9.26□□□□□ -0.93
SCN1A-207ENST00000507401 LRRC37A2A6NM11 1700 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 RNF223E7ERA6 249 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 OPLAHO14841 1288 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 SLC27A2O14975 620 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CYTH3O43739 400 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 PPP1R11O60927 126 aaPredicted RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CFBP00751 764 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 NR3C2P08235 984 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CALM1P0DP23 149 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CALM2P0DP24 149 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CALM3P0DP25 149 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 TGFB3P10600 412 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 GNAQP50148 359 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 SMAD3P84022 425 aaKnown RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 PURAQ00577 322 aaKnown RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 FUT2Q10981 343 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 PPIGQ13427 754 aaKnown RBP eCLIP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 TSGA10IPQ3SY00 556 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 C9orf50Q5SZB4 431 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 UTP14CQ5TAP6 766 aaKnown RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 RNF20Q5VTR2 975 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CREB3L3Q68CJ9 461 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CASC1Q6TDU7 716 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CHST3Q7LGC8 479 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 VSIG10LQ86VR7 867 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 SCUBE3Q8IX30 993 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 DEFB123Q8N688 67 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 RDH13Q8NBN7 331 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 OR6J1Q8NGC5 347 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 CTCFLQ8NI51 663 aaPredicted RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 PIGSQ96S52 555 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 PRKD2Q9BZL6 878 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 LY9Q9HBG7 655 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 SENP2Q9HC62 589 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 PXMP2Q9NR77 195 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 MTMR10Q9NXD2 777 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 COL20A1Q9P218 1284 aa9.25□□□□□ -0.93
SCN1A-207ENST00000507401 DDX41Q9UJV9 622 aaKnown RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 V9GY48 417 aaPredicted RBP9.25□□□□□ -0.93
SCN1A-207ENST00000507401 GCOM1H8Y6P7 765 aaPredicted RBP9.24□□□□□ -0.93
SCN1A-207ENST00000507401 PRC1O43663 620 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 NR1I2O75469 434 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 DDAH1O94760 285 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 GH1P01241 217 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 POLR2MP0CAP2 368 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 EPHB4P54760 987 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 LAMC2Q13753 1193 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 SLC35G1Q2M3R5 365 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 NFRKBQ6P4R8 1299 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 C16orf59Q7L2K0 433 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 ZNF654Q8IZM8 581 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 TBC1D32Q96NH3 1257 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 GBP4Q96PP9 640 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 SPZ1Q9BXG8 430 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 ALDH8A1Q9H2A2 487 aaPredicted RBP9.24□□□□□ -0.93
SCN1A-207ENST00000507401 GRPEL1Q9HAV7 217 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 ANO2Q9NQ90 1003 aa9.24□□□□□ -0.93
SCN1A-207ENST00000507401 KIAA1217Q5T5P2 1943 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 CCDC69A6NI79 296 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 SH2B2O14492 632 aaPredicted RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 PPFIA4O75335 1185 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 OFD1O75665 1012 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 STAM2O75886 525 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 ARIH2O95376 493 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 ADH1BP00325 375 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 MYL3P08590 195 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 CD46P15529 392 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 EIF2AK2P19525 551 aaKnown RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 CASTP20810 708 aaKnown RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 PTGS1P23219 599 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 PSMC6P62333 389 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 RASIP1Q5U651 963 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 TAF3Q5VWG9 929 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 PSRC1Q6PGN9 363 aaPredicted RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 SEPT14Q6ZU15 432 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 SGMS1Q86VZ5 419 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 HOMER1Q86YM7 354 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 RPUSD2Q8IZ73 545 aaKnown RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 THAP11Q96EK4 314 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 RRP36Q96EU6 259 aaKnown RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 PDCD2LQ9BRP1 358 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 TRPV6Q9H1D0 765 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 HIPK3Q9H422 1215 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 STXBP5LQ9Y2K9 1186 aa9.23□□□□□ -0.93
SCN1A-207ENST00000507401 LAMA2P24043 3122 aaKnown RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 BAZ2BQ9UIF8 2168 aaKnown RBP9.23□□□□□ -0.93
SCN1A-207ENST00000507401 TMEM265A0A087WTH1 108 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 PIK3CDO00329 1044 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 TRAK2O60296 914 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 B4GALT4O60513 344 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 CDC45O75419 566 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 ZMYND10O75800 440 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 S1PR4O95977 384 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 CSF2RAP15509 400 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms