RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CASC1Q6TDU7 716 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 CYB5R4Q7L1T6 521 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 TMTC2Q8N394 836 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 NECAB3Q96P71 396 aaPredicted RBP24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 SUGCTQ9HAC7 445 aa24.26■■□□□ 1.47
SQSTM1-210ENST00000506042 SORBS3O60504 671 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 PPP1R11O60927 126 aaPredicted RBP24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 RGS20O76081 388 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 GPNMBQ14956 572 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 TMEM31Q5JXX7 168 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 KRT40Q6A162 431 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 INPP4AQ96PE3 977 aaPredicted RBP24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 UBE2ZQ9H832 354 aaPredicted RBP24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 EHMT1Q9H9B1 1298 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 RWDD3Q9Y3V2 267 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 ARIH1Q9Y4X5 557 aaPredicted RBP24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 PTPRSQ13332 1948 aa24.25■■□□□ 1.47
SQSTM1-210ENST00000506042 LPXNO60711 386 aa24.24■■□□□ 1.47
SQSTM1-210ENST00000506042 SMARCA1P28370 1054 aa24.24■■□□□ 1.47
SQSTM1-210ENST00000506042 SENP7Q9BQF6 1050 aa24.24■■□□□ 1.47
SQSTM1-210ENST00000506042 MTA3Q9BTC8 594 aa24.24■■□□□ 1.47
SQSTM1-210ENST00000506042 DDAH1O94760 285 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 ARHGEF15O94989 841 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 CALM1P0DP23 149 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 CALM2P0DP24 149 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 CALM3P0DP25 149 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 PLA2G5P39877 138 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 ZNF200P98182 395 aaPredicted RBP24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 PCNX4Q63HM2 1172 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 TAF2Q6P1X5 1199 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 CYFIP1Q7L576 1253 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 TMCO2Q7Z6W1 182 aaPredicted RBP24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 IL31RAQ8NI17 732 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 MRPL38Q96DV4 380 aaKnown RBP24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 SPZ1Q9BXG8 430 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 NRCAMQ92823 1304 aa24.23■■□□□ 1.47
SQSTM1-210ENST00000506042 FRMPD4Q14CM0 1322 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 SPATA31C2B4DYI2 1134 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 E7EWF7 191 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 NCK2O43639 380 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 CYP21A2P08686 494 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 HTRA4P83105 476 aaPredicted RBP24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 TROAPQ12815 778 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 NFXL1Q6ZNB6 911 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 EXOC6Q8TAG9 804 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 YTHDC1Q96MU7 727 aaKnown RBP24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 RNPEPQ9H4A4 650 aa24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 SPTBN5Q9NRC6 3674 aaKnown RBP24.22■■□□□ 1.47
SQSTM1-210ENST00000506042 CCDC69A6NI79 296 aa24.21■■□□□ 1.47
SQSTM1-210ENST00000506042 SP2Q02086 613 aa24.21■■□□□ 1.47
SQSTM1-210ENST00000506042 IFIH1Q9BYX4 1025 aaKnown RBP24.21■■□□□ 1.47
SQSTM1-210ENST00000506042 MICAL3Q7RTP6 2002 aa24.21■■□□□ 1.47
SQSTM1-210ENST00000506042 CHD7Q9P2D1 2997 aa24.21■■□□□ 1.47
SQSTM1-210ENST00000506042 PIK3CDO00329 1044 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 TREHO43280 583 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 CTSHP09668 335 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 HOXC8P31273 242 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 ARHGAP4P98171 946 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 LEXMQ3ZCV2 418 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 TRAF7Q6Q0C0 670 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 SP7Q8TDD2 431 aaPredicted RBP24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 TOP1MTQ969P6 601 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 GPR20Q99678 358 aa24.2■■□□□ 1.46
SQSTM1-210ENST00000506042 NCOR1O75376 2440 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 SPDYE3A6NKU9 549 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 UPP2O95045 317 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 KCNA5P22460 613 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 MBTPS1Q14703 1052 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 UTP14CQ5TAP6 766 aaKnown RBP24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 PIBF1Q8WXW3 757 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 WNT8BQ93098 351 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 GPRASP2Q96D09 838 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 SETD4Q9NVD3 440 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 ERAP1Q9NZ08 941 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 RTEL1Q9NZ71 1219 aa24.19■■□□□ 1.46
SQSTM1-210ENST00000506042 TRANK1O15050 2925 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 CHMLP26374 656 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 SSTR3P32745 418 aaPredicted RBP24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 GPM6BQ13491 265 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 EPC2Q52LR7 807 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 ZNF654Q8IZM8 581 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 FIBCD1Q8N539 461 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 TMEM87BQ96K49 555 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 C17orf80Q9BSJ5 609 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 COL4A6Q14031 1691 aa24.18■■□□□ 1.46
SQSTM1-210ENST00000506042 KAT6AQ92794 2004 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 H3BNC9 293 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 M0QZ92 97 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 MAFGO15525 162 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 CYTH3O43739 400 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 ALADP13716 330 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 MCM5P33992 734 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 MRPS9P82933 396 aaKnown RBP24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 SP4Q02446 784 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 SYNE3Q6ZMZ3 975 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 TMEM192Q8IY95 271 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 BANK1Q8NDB2 785 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 PPP2R3CQ969Q6 453 aa24.17■■□□□ 1.46
SQSTM1-210ENST00000506042 IL17RAQ96F46 866 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms