RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PPP1R14CQ8TAE6 165 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 PLEKHA4Q9H4M7 779 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 HPSEQ9Y251 543 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 CLRN2A0PK11 232 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 CACNA1FO60840 1977 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 IBSPP21815 317 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 YWHAEP62258 255 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 MAPK8IP2Q13387 824 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 SPATS2Q86XZ4 545 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 ABCB6Q9NP58 842 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 CAPN11Q9UMQ6 739 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 NFAT5O94916 1531 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 CC2D1AQ6P1N0 951 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 EXOC4Q96A65 974 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 TCRBV5S4A2TA0A5A2 114 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 PGRMC1O00264 195 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 PDIA5Q14554 519 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 CASP8Q14790 479 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 C6orf163Q5TEZ5 329 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 SREK1Q8WXA9 508 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 FAM20AQ96MK3 541 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 PLCD4Q9BRC7 762 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 LTN1O94822 1766 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 FLT1P17948 1338 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 SALL1Q9NSC2 1324 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 TTC26A0AVF1 554 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 USP17L10C9JJH3 530 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 CLIC2O15247 247 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 RNF40O75150 1001 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 USP14P54578 494 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 SETDB1Q15047 1291 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 RCSD1Q6JBY9 416 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 DCUN1D2Q6PH85 259 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 ANKRD7Q92527 254 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 TSNARE1Q96NA8 513 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 FAM114A2Q9NRY5 505 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 ADD3Q9UEY8 706 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 E7EVH7 732 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 CTIFO43310 598 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 HEXIM1O94992 359 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 ABCD1P33897 745 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 UBXN2AP68543 259 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 C16orf86Q6ZW13 317 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 ADSSL1Q8N142 457 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 PPM1KQ8N3J5 372 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 DCAF8L1A6NGE4 600 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 EIF3CLB5ME19 914 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 RHOBTB3O94955 611 aa11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 EIF3CQ99613 913 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 MORC2Q9Y6X9 1032 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-205ENST00000503057 SMARCA1P28370 1054 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 NYAP1Q6ZVC0 841 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 FAM81BQ96LP2 452 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 C7orf25Q9BPX7 421 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 USTQ9Y2C2 406 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 FAM208AQ9UK61 1670 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 STXBP3O00186 592 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 USP11P51784 963 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 SNX16P57768 344 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 GLE1Q53GS7 698 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 ATP6V0A1Q93050 837 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 CRAMP1Q96RY5 1269 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 LRRC53A6NM62 1247 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 FAN1Q9Y2M0 1017 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 SLC26A4O43511 780 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 FTCDO95954 541 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 TC2NQ8N9U0 490 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 BHMT2Q9H2M3 363 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 EPB41L5Q9HCM4 733 aa11.74□□□□□ -0.53
LIMCH1-205ENST00000503057 PRPF6O94906 941 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 HOXA13P31271 388 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 ALS2CLQ60I27 953 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 RASGRP2Q7LDG7 609 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 DAGLBQ8NCG7 672 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 NT5C1BQ96P26 610 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TRIM9Q9C026 710 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 MYO3BQ8WXR4 1341 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 RGS16O15492 202 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 MMP10P09238 476 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 CXCR5P32302 372 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 GTF2A1P52655 376 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 CCDC93Q567U6 631 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 NAALADL2Q58DX5 795 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 BCL9O00512 1426 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 ZMYND10O75800 440 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 GFPT2O94808 682 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TDP2O95551 362 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 BPIFB4P59827 614 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TROAPQ12815 778 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 PTPROQ16827 1216 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TBC1D16Q8TBP0 767 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 CABS1Q96KC9 395 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 DPH5Q9H2P9 285 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 MTMR4Q9NYA4 1195 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 E9PMD0 336 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 GH2P01242 217 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 ARHGAP4P98171 946 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 TERF2Q15554 542 aa11.73□□□□□ -0.53
LIMCH1-205ENST00000503057 NTRK3Q16288 839 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms