RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 CCDC120Q96HB5 630 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 ZNF512BQ96KM6 892 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-208ENST00000497026 FAM84AQ96KN4 292 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 LRRC3Q9BY71 257 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 NSUN3Q9H649 340 aaKnown RBP6.24□□□□□ -1.41
CSMD3-208ENST00000497026 KCNQ5Q9NR82 932 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 ARFGEF2Q9Y6D5 1785 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 A0A0G2JLW4 131 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 ANXA1P04083 346 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 SERPINB2P05120 415 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 DPEP1P16444 411 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 TGFB2P61812 414 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 APOBRQ0VD83 1088 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 GPR162Q16538 588 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 TTLL7Q6ZT98 887 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 ASPNQ9BXN1 380 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 IFT57Q9NWB7 429 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 GMIPQ9P107 970 aa6.23□□□□□ -1.41
CSMD3-208ENST00000497026 LAS1LQ9Y4W2 734 aaKnown RBP6.23□□□□□ -1.41
CSMD3-208ENST00000497026 ATP10DQ9P241 1426 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 FAM86C2PA6NEL3 165 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 ZGLP1P0C6A0 271 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 MYL6BP14649 208 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 EIF2S2P20042 333 aaKnown RBP6.22□□□□□ -1.41
CSMD3-208ENST00000497026 CHRNA5P30532 468 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 GALK1P51570 392 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 SNW1Q13573 536 aaKnown RBP6.22□□□□□ -1.41
CSMD3-208ENST00000497026 HLFQ16534 295 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 TIGD5Q53EQ6 642 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 PRR5LQ6MZQ0 368 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 SYDE1Q6ZW31 735 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-208ENST00000497026 TMC3Q7Z5M5 1100 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 NKD1Q969G9 470 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 VWCEQ96DN2 955 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 RNF32Q9H0A6 362 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 EBF1Q9UH73 591 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 MAP3K15Q6ZN16 1313 aa6.22□□□□□ -1.41
CSMD3-208ENST00000497026 SBF1O95248 1867 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 RBM47A0AV96 593 aaKnown RBP6.21□□□□□ -1.42
CSMD3-208ENST00000497026 ATE1O95260 518 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 HPXP02790 462 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 HOXB7P09629 217 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 MFAP1P55081 439 aaKnown RBP6.21□□□□□ -1.42
CSMD3-208ENST00000497026 GNAI1P63096 354 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 NMIQ13287 307 aaPredicted RBP6.21□□□□□ -1.42
CSMD3-208ENST00000497026 CLEC4GQ6UXB4 293 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 FAM9BQ8IZU0 186 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 NGEFQ8N5V2 710 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 ATG4CQ96DT6 458 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 EAF1Q96JC9 268 aaPredicted RBP6.21□□□□□ -1.42
CSMD3-208ENST00000497026 BACH2Q9BYV9 841 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 SP110Q9HB58 689 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 PODXL2Q9NZ53 605 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 CHPF2Q9P2E5 772 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 MINPP1Q9UNW1 487 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 PCDHGB7Q9Y5F8 929 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 LAMB2P55268 1798 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 UBN2Q6ZU65 1347 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 ADCY9O60503 1353 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 ABCC12Q96J65 1359 aa6.21□□□□□ -1.42
CSMD3-208ENST00000497026 SLX4Q8IY92 1834 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 ERVV-1B6SEH8 477 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 YY1P25490 414 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 TEKQ02763 1124 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF394Q53GI3 561 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 NPM2Q86SE8 214 aaKnown RBP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 TSPYL6Q8N831 410 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 C8orf58Q8NAV2 365 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 TSR2Q969E8 191 aaKnown RBP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 SPON2Q9BUD6 331 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 ASCC2Q9H1I8 757 aaPredicted RBP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 EHMT1Q9H9B1 1298 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 DDX21Q9NR30 783 aaKnown RBP eCLIP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 NIP7Q9Y221 180 aaKnown RBP eCLIP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF652Q9Y2D9 606 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 FER1L6Q2WGJ9 1857 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF521Q96K83 1311 aa6.2□□□□□ -1.42
CSMD3-208ENST00000497026 IBTKQ9P2D0 1353 aaPredicted RBP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 DDX60Q8IY21 1712 aaKnown RBP6.2□□□□□ -1.42
CSMD3-208ENST00000497026 CCDC88AQ3V6T2 1871 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 MEIS1O00470 390 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 ELL2O00472 640 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-208ENST00000497026 RPL10P27635 214 aaKnown RBP6.19□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF76P36508 570 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 CALD1Q05682 793 aaKnown RBP6.19□□□□□ -1.42
CSMD3-208ENST00000497026 NBPF12Q5TAG4 269 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-208ENST00000497026 KIF6Q6ZMV9 814 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 COPS6Q7L5N1 327 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 NLRC3Q7RTR2 1065 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 KIAA0825Q8IV33 1275 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 ZNF34Q8IZ26 560 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 CNBD1Q8NA66 436 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 BRIP1Q9BX63 1249 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 FOXP3Q9BZS1 431 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 CNNM2Q9H8M5 875 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 DCP1AQ9NPI6 582 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-208ENST00000497026 IL16Q14005 1332 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 RIC1Q4ADV7 1423 aa6.19□□□□□ -1.42
CSMD3-208ENST00000497026 TIAM2Q8IVF5 1701 aa6.18□□□□□ -1.42
CSMD3-208ENST00000497026 FKTNO75072 461 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms